RNA–Protein interactions for RNA: ENST00000325599.12

SHQ1-201, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHQ1, Length 2,879 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-201ENST00000325599 XKR9Q5GH70 373 aa17.66■□□□□ 0.42
SHQ1-201ENST00000325599 TADA2BQ86TJ2 420 aa17.66■□□□□ 0.42
SHQ1-201ENST00000325599 CPNE8Q86YQ8 564 aa17.66■□□□□ 0.42
SHQ1-201ENST00000325599 MCF2L2Q86YR7 1114 aa17.66■□□□□ 0.42
SHQ1-201ENST00000325599 CCDC26Q8TAB7 109 aa17.66■□□□□ 0.42
SHQ1-201ENST00000325599 UBLCP1Q8WVY7 318 aaPredicted RBP17.66■□□□□ 0.42
SHQ1-201ENST00000325599 SEMA4DQ92854 862 aa17.66■□□□□ 0.42
SHQ1-201ENST00000325599 LRRC4CQ9HCJ2 640 aa17.66■□□□□ 0.42
SHQ1-201ENST00000325599 CTNNA1P35221 906 aaKnown RBP17.65■□□□□ 0.42
SHQ1-201ENST00000325599 KDM7AQ6ZMT4 941 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 NIPA1Q7RTP0 329 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 NIM1KQ8IY84 436 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 ZBED3Q96IU2 234 aaPredicted RBP17.65■□□□□ 0.42
SHQ1-201ENST00000325599 KREMEN1Q96MU8 473 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 STK32BQ9NY57 414 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 TNS1Q9HBL0 1735 aaKnown RBP17.65■□□□□ 0.42
SHQ1-201ENST00000325599 TESPA1A2RU30 521 aaPredicted RBP17.65■□□□□ 0.42
SHQ1-201ENST00000325599 CCDC169A6NNP5 214 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 WDR46O15213 610 aaKnown RBP17.65■□□□□ 0.42
SHQ1-201ENST00000325599 CYP26A1O43174 497 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 MAPTP10636 758 aaKnown RBP17.65■□□□□ 0.42
SHQ1-201ENST00000325599 CHRNB2P17787 502 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 HPDP32754 393 aaPredicted RBP17.65■□□□□ 0.42
SHQ1-201ENST00000325599 CETN1Q12798 172 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 NSMFQ6X4W1 530 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 NOP9Q86U38 636 aaKnown RBP17.65■□□□□ 0.42
SHQ1-201ENST00000325599 SLC47A2Q86VL8 602 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 PPM1KQ8N3J5 372 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 EIF1ADQ8N9N8 165 aaKnown RBP17.65■□□□□ 0.42
SHQ1-201ENST00000325599 MTMR14Q8NCE2 650 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 FAM84AQ96KN4 292 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 RMDN3Q96TC7 470 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 TMBIM4Q9HC24 238 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 TTC7AQ9ULT0 858 aaPredicted RBP17.65■□□□□ 0.42
SHQ1-201ENST00000325599 TELO2Q9Y4R8 837 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 LIG3P49916 1009 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 MXI1P50539 228 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 ZNF844Q08AG5 666 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 AGBL3Q8NEM8 1001 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.65■□□□□ 0.42
SHQ1-201ENST00000325599 MYOZ2Q9NPC6 264 aa17.65■□□□□ 0.42
SHQ1-201ENST00000325599 CLSTN1O94985 981 aa17.64■□□□□ 0.41
SHQ1-201ENST00000325599 ZNF772Q68DY9 489 aaPredicted RBP17.64■□□□□ 0.41
SHQ1-201ENST00000325599 C12orf56Q8IXR9 622 aa17.64■□□□□ 0.41
SHQ1-201ENST00000325599 KAT2BQ92831 832 aa17.64■□□□□ 0.41
SHQ1-201ENST00000325599 CARD9Q9H257 536 aa17.64■□□□□ 0.41
SHQ1-201ENST00000325599 TOPORSQ9NS56 1045 aaPredicted RBP17.64■□□□□ 0.41
SHQ1-201ENST00000325599 TBC1D22BQ9NU19 505 aa17.64■□□□□ 0.41
SHQ1-201ENST00000325599 UTP11Q9Y3A2 253 aaKnown RBP17.64■□□□□ 0.41
SHQ1-201ENST00000325599 RIPK3Q9Y572 518 aa17.64■□□□□ 0.41
SHQ1-201ENST00000325599 RFX1P22670 979 aa17.64■□□□□ 0.41
SHQ1-201ENST00000325599 MTMR2Q13614 643 aa17.64■□□□□ 0.41
SHQ1-201ENST00000325599 ALCAMQ13740 583 aa17.64■□□□□ 0.41
SHQ1-201ENST00000325599 ATP8B4Q8TF62 1192 aa17.64■□□□□ 0.41
SHQ1-201ENST00000325599 SEC14L1Q92503 715 aa17.64■□□□□ 0.41
SHQ1-201ENST00000325599 LRRC45Q96CN5 670 aa17.64■□□□□ 0.41
SHQ1-201ENST00000325599 BTBD6Q96KE9 485 aa17.64■□□□□ 0.41
SHQ1-201ENST00000325599 TEPSINQ96N21 525 aa17.64■□□□□ 0.41
SHQ1-201ENST00000325599 MYO1FO00160 1098 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 LYPLA2O95372 231 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 PTENP60484 403 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 DHX9Q08211 1270 aaKnown RBP17.63■□□□□ 0.41
SHQ1-201ENST00000325599 BIRC2Q13490 618 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 MESDQ14696 234 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 SNRNP35Q16560 246 aaKnown RBP17.63■□□□□ 0.41
SHQ1-201ENST00000325599 ANO5Q75V66 913 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 TMC3Q7Z5M5 1100 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 C4orf19Q8IY42 314 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 EFCAB13Q8IY85 973 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 EPS8L1Q8TE68 723 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 PDCD2LQ9BRP1 358 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 CALCAP01258 141 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 MMEP08473 750 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 VCAM1P19320 739 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 LSP1P33241 339 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 NCKAP1LP55160 1127 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 PSMC5P62195 406 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 FBXW10Q5XX13 1052 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 ZDHHC14Q8IZN3 488 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 BSNDQ8WZ55 320 aa17.63■□□□□ 0.41
SHQ1-201ENST00000325599 NOCTQ9UK39 431 aaKnown RBP17.63■□□□□ 0.41
SHQ1-201ENST00000325599 EBAG9O00559 213 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 MYZAPP0CAP1 466 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 NPTX2P47972 431 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 SEC24CP53992 1094 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 GPC5P78333 572 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 DR1Q01658 176 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 RNF207Q6ZRF8 634 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 FMNL3Q8IVF7 1028 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 RHOT2Q8IXI1 618 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 LPAR1Q92633 364 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 KIAA1683Q9H0B3 1180 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 PXMP2Q9NR77 195 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 TBX20Q9UMR3 447 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 HMGB1P1B2RPK0 211 aaPredicted RBP17.62■□□□□ 0.41
SHQ1-201ENST00000325599 NDUFAB1O14561 156 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 P4HA2O15460 535 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 SORBS3O60504 671 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 COMTP21964 271 aa17.62■□□□□ 0.41
SHQ1-201ENST00000325599 CNGA1P29973 690 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms