RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 HARSP12081 509 aaKnown RBP10.95□□□□□ -0.66
HMGB3-201ENST00000325307 CCL5P13501 91 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 PSMC2P35998 433 aaKnown RBP10.95□□□□□ -0.66
HMGB3-201ENST00000325307 PTENP60484 403 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 CCZ1BP86790 482 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 CCZ1P86791 482 aaPredicted RBP10.95□□□□□ -0.66
HMGB3-201ENST00000325307 UBXN1Q04323 297 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 CDCA2Q69YH5 1023 aaPredicted RBP10.95□□□□□ -0.66
HMGB3-201ENST00000325307 CCSAPQ6IQ19 270 aaPredicted RBP10.95□□□□□ -0.66
HMGB3-201ENST00000325307 TMC6Q7Z403 805 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 FAM186BQ8IYM0 893 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 HSPBP1Q9NZL4 362 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 GTF2IRD1Q9UHL9 959 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 A0A1B0GTH6 734 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 HSPA1AP0DMV8 641 aaKnown RBP10.95□□□□□ -0.66
HMGB3-201ENST00000325307 HSPA1BP0DMV9 641 aaKnown RBP10.95□□□□□ -0.66
HMGB3-201ENST00000325307 DCAF17Q5H9S7 520 aaPredicted RBP10.95□□□□□ -0.66
HMGB3-201ENST00000325307 XXYLT1Q8NBI6 393 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 SAAL1Q96ER3 474 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 MRPL4Q9BYD3 311 aaKnown RBP10.95□□□□□ -0.66
HMGB3-201ENST00000325307 INTS13Q9NVM9 706 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.95□□□□□ -0.66
HMGB3-201ENST00000325307 MOXD2PA6NHM9 499 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 TEX33O43247 280 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 CTCFP49711 727 aaPredicted RBP10.95□□□□□ -0.66
HMGB3-201ENST00000325307 GPC3P51654 580 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 SNRPFP62306 86 aaKnown RBP10.95□□□□□ -0.66
HMGB3-201ENST00000325307 PRPF4BQ13523 1007 aaKnown RBP10.95□□□□□ -0.66
HMGB3-201ENST00000325307 ITGA7Q13683 1181 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 GDF6Q6KF10 455 aaPredicted RBP10.95□□□□□ -0.66
HMGB3-201ENST00000325307 FKBP15Q5T1M5 1219 aa10.94□□□□□ -0.66
HMGB3-201ENST00000325307 APTXQ7Z2E3 356 aaKnown RBP10.94□□□□□ -0.66
HMGB3-201ENST00000325307 MINDY3Q9H8M7 445 aa10.94□□□□□ -0.66
HMGB3-201ENST00000325307 IFT122Q9HBG6 1241 aa10.94□□□□□ -0.66
HMGB3-201ENST00000325307 STARD7Q9NQZ5 370 aa10.94□□□□□ -0.66
HMGB3-201ENST00000325307 LRRC10BA6NIK2 292 aa10.94□□□□□ -0.66
HMGB3-201ENST00000325307 M0QZ92 97 aa10.94□□□□□ -0.66
HMGB3-201ENST00000325307 SLC16A3O15427 465 aaKnown RBP10.94□□□□□ -0.66
HMGB3-201ENST00000325307 ERLIN2O94905 339 aa10.94□□□□□ -0.66
HMGB3-201ENST00000325307 ADAM17P78536 824 aa10.94□□□□□ -0.66
HMGB3-201ENST00000325307 CDC42EP1Q00587 391 aa10.94□□□□□ -0.66
HMGB3-201ENST00000325307 MAPK8IP2Q13387 824 aaPredicted RBP10.94□□□□□ -0.66
HMGB3-201ENST00000325307 NFIL3Q16649 462 aa10.94□□□□□ -0.66
HMGB3-201ENST00000325307 MAN2A1Q16706 1144 aa10.94□□□□□ -0.66
HMGB3-201ENST00000325307 TAF2Q6P1X5 1199 aa10.94□□□□□ -0.66
HMGB3-201ENST00000325307 ZBTB33Q86T24 672 aa10.94□□□□□ -0.66
HMGB3-201ENST00000325307 ZNF410Q86VK4 478 aa10.94□□□□□ -0.66
HMGB3-201ENST00000325307 ZC3H3Q8IXZ2 948 aaKnown RBP10.94□□□□□ -0.66
HMGB3-201ENST00000325307 PCMTD1Q96MG8 357 aaPredicted RBP10.94□□□□□ -0.66
HMGB3-201ENST00000325307 OSMRQ99650 979 aa10.94□□□□□ -0.66
HMGB3-201ENST00000325307 TSEN34Q9BSV6 310 aaKnown RBP10.94□□□□□ -0.66
HMGB3-201ENST00000325307 GCOM2Q9BZD3 368 aaPredicted RBP10.94□□□□□ -0.66
HMGB3-201ENST00000325307 METTL14Q9HCE5 456 aaKnown RBP10.94□□□□□ -0.66
HMGB3-201ENST00000325307 LGALS16A8MUM7 142 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 KRT13P13646 458 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 ADSSP30520 456 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 MBTD1Q05BQ5 628 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 PTGISQ16647 500 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 SLFN12LQ6IEE8 588 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 SLC39A4Q6P5W5 647 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 FRMD5Q7Z6J6 570 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 RSPH3Q86UC2 560 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 SLC9A9Q8IVB4 645 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 ZBTB45Q96K62 511 aaPredicted RBP10.93□□□□□ -0.66
HMGB3-201ENST00000325307 PRIMPOLQ96LW4 560 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 CCDC113Q9H0I3 377 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 PRMT7Q9NVM4 692 aaPredicted RBP10.93□□□□□ -0.66
HMGB3-201ENST00000325307 DMAC2Q9NW81 257 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 A0A1W2PQ45 241 aaPredicted RBP10.93□□□□□ -0.66
HMGB3-201ENST00000325307 A0A1W2PQY0 241 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 CLDN3O15551 220 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 B4GALT5O43286 388 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 MYBPC2Q14324 1141 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 NR1I3Q14994 352 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 VWA3BQ502W6 1294 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 FBXO46Q6PJ61 603 aaPredicted RBP10.93□□□□□ -0.66
HMGB3-201ENST00000325307 C12orf56Q8IXR9 622 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 FAM213AQ9BRX8 229 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 MSTO1Q9BUK6 570 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 NDST4Q9H3R1 872 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 MMRN2Q9H8L6 949 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 USP27XA6NNY8 438 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 ACKR2O00590 384 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 EDN1P05305 212 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 FGFR4P22455 802 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 POU5F1BQ06416 359 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 CDR2LQ86X02 465 aaPredicted RBP10.93□□□□□ -0.66
HMGB3-201ENST00000325307 ZSWIM2Q8NEG5 633 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 MKNK1Q9BUB5 465 aa10.93□□□□□ -0.66
HMGB3-201ENST00000325307 PAK6Q9NQU5 681 aaPredicted RBP10.93□□□□□ -0.66
HMGB3-201ENST00000325307 AGO2Q9UKV8 859 aaKnown RBP10.93□□□□□ -0.66
HMGB3-201ENST00000325307 TTLL13PA6NNM8 815 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 CTSHP09668 335 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 GARTP22102 1010 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 ATF7IP2Q5U623 682 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 ZPBP2Q6X784 338 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 TRIM59Q8IWR1 403 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 NFKBIZQ9BYH8 718 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 FZD8Q9H461 694 aa10.92□□□□□ -0.66
HMGB3-201ENST00000325307 GRIN2DO15399 1336 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms