RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 SARS2Q9NP81 518 aaKnown RBP14.67□□□□□ -0.06
CSPG4-201ENST00000308508 GOLGA8IPA6NC78 632 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 AP3B1O00203 1094 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 SCFD1Q8WVM8 642 aa14.67□□□□□ -0.06
CSPG4-201ENST00000308508 DDX47Q9H0S4 455 aaKnown RBP14.67□□□□□ -0.06
CSPG4-201ENST00000308508 NT5C2P49902 561 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 TRIM71Q2Q1W2 868 aaKnown RBP14.66□□□□□ -0.06
CSPG4-201ENST00000308508 IZUMO3Q5VZ72 239 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 BTN2A2Q8WVV5 523 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 TADA1Q96BN2 335 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 CYFIP2Q96F07 1278 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 IL1RAPL1Q9NZN1 696 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 GOLGA8JA6NMD2 632 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 RSPH10B2B2RC85 870 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 RSPH10BP0C881 870 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 CCNA1P78396 465 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 TMA16Q96EY4 203 aaKnown RBP14.66□□□□□ -0.06
CSPG4-201ENST00000308508 HIC2Q96JB3 615 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 TCP10L2B9ZVM9 353 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 RNF135Q8IUD6 432 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 OSTNP61366 133 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 SEMA3FQ13275 785 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 HOMEZQ8IX15 550 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 ACAP3Q96P50 834 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 RHBDL2Q9NX52 303 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 STK32BQ9NY57 414 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 AIPL1Q9NZN9 384 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 SLC9A2Q9UBY0 812 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 PDE8BO95263 885 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 WLSQ5T9L3 541 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 SEC16BQ96JE7 1060 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 AP5M1Q9H0R1 490 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 KANSL2Q9H9L4 492 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 COPRSQ9NQ92 184 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 ABCA5Q8WWZ7 1642 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 DLGAP3O95886 979 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 NR3C1P04150 777 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 DSG1Q02413 1049 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 ZNF699Q32M78 642 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 TTC23LQ6PF05 361 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 C19orf60Q96EN9 201 aa14.66□□□□□ -0.06
CSPG4-201ENST00000308508 NBPF26B4DH59 902 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 FAM107AO95990 144 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 PCCAP05165 728 aaPredicted RBP14.65□□□□□ -0.06
CSPG4-201ENST00000308508 CHN1P15882 459 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 ACADSP16219 412 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 TP53BP2Q13625 1128 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 MTHFD1LQ6UB35 978 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 NBPF15Q8N660 670 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 MTO1Q9Y2Z2 717 aaKnown RBP14.65□□□□□ -0.06
CSPG4-201ENST00000308508 TMEM191CA6NGB0 347 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 FGFR4P22455 802 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 CDC25AP30304 524 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 SOX6P35712 828 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 CHRNDQ07001 517 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 MTERF2Q49AM1 385 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 SPATA4Q8NEY3 305 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 HDAC6Q9UBN7 1215 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 UBXN2AP68543 259 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 DPP9Q86TI2 863 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 OR6B3Q8NGW1 331 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 INPP5DQ92835 1189 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 ZFATQ9P243 1243 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 OSBPP22059 807 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 KRT17Q04695 432 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 CRYMQ14894 314 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 ZNF589Q86UQ0 364 aaPredicted RBP14.65□□□□□ -0.06
CSPG4-201ENST00000308508 PASD1Q8IV76 773 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 USE1Q9NZ43 259 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.65□□□□□ -0.06
CSPG4-201ENST00000308508 PRG3Q9Y2Y8 225 aaPredicted RBP14.65□□□□□ -0.06
CSPG4-201ENST00000308508 CD2BP2O95400 341 aaKnown RBP14.65□□□□□ -0.06
CSPG4-201ENST00000308508 LIFRP42702 1097 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 ST13P50502 369 aaKnown RBP14.65□□□□□ -0.06
CSPG4-201ENST00000308508 SCNN1DP51172 638 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 KCNH2Q12809 1159 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 THEM5Q8N1Q8 247 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 DDI1Q8WTU0 396 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 SGSM3Q96HU1 749 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 PNMA6FA0A0J9YX94 578 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 C5orf58C9J3I9 102 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 VHLP40337 213 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 PIGSQ96S52 555 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 GINS4Q9BRT9 223 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 THTPAQ9BU02 230 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 DLGAP2Q9P1A6 1054 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 E7ENQ6 273 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 ARSEP51690 589 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 NUP93Q8N1F7 819 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 PDCD6IPQ8WUM4 868 aaKnown RBP14.65□□□□□ -0.06
CSPG4-201ENST00000308508 ZNF496Q96IT1 587 aaPredicted RBP14.65□□□□□ -0.06
CSPG4-201ENST00000308508 NDUFA13Q9P0J0 144 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 ADGRG1Q9Y653 693 aa14.65□□□□□ -0.06
CSPG4-201ENST00000308508 CDH16O75309 829 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 AGBL2Q5U5Z8 902 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 SPICE1Q8N0Z3 855 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 OPTNQ96CV9 577 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 ADD2P35612 726 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 SYDE2Q5VT97 1194 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 TMEM270Q6UE05 265 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms