RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 EPHA7Q15375 998 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 TMEM266Q2M3C6 531 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 EAPPQ56P03 285 aaPredicted RBP14.45□□□□□ -0.1
SKA3-201ENST00000298260 CAPN12Q6ZSI9 719 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 SLC51AQ86UW1 340 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 VPS36Q86VN1 386 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 LRRC8CQ8TDW0 803 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 SLC20A1Q8WUM9 679 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 RFFLQ8WZ73 363 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 IFT43Q96FT9 208 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 C9orf72Q96LT7 481 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 MIPEPQ99797 713 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 SLIT2O94813 1529 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 SFI1A8K8P3 1242 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 PIAS1O75925 651 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 NEK3P51956 506 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 LBRQ14739 615 aaKnown RBP14.45□□□□□ -0.1
SKA3-201ENST00000298260 TAF1BQ53T94 588 aaPredicted RBP14.45□□□□□ -0.1
SKA3-201ENST00000298260 KBTBD2Q8IY47 623 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 RBBP8NLQ8NC74 664 aaPredicted RBP14.45□□□□□ -0.1
SKA3-201ENST00000298260 FAM81AQ8TBF8 368 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 CARD9Q9H257 536 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 SEC63Q9UGP8 760 aaKnown RBP14.45□□□□□ -0.1
SKA3-201ENST00000298260 GRID1Q9ULK0 1009 aa14.45□□□□□ -0.1
SKA3-201ENST00000298260 CACNA1SQ13698 1873 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 RSPH10B2B2RC85 870 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 WFS1O76024 890 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 CYP1A1P04798 512 aaPredicted RBP14.44□□□□□ -0.1
SKA3-201ENST00000298260 RSPH10BP0C881 870 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 ACADSP16219 412 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 RFC4P35249 363 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 POLGP54098 1239 aaPredicted RBP14.44□□□□□ -0.1
SKA3-201ENST00000298260 PSMC6P62333 389 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 SETDB1Q15047 1291 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 SPDYCQ5MJ68 293 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 TMEM63BQ5T3F8 832 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 RNF43Q68DV7 783 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 MFSD5Q6N075 450 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 KIAA0825Q8IV33 1275 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 CRNKL1Q9BZJ0 848 aaKnown RBP14.44□□□□□ -0.1
SKA3-201ENST00000298260 STMN4Q9H169 189 aaPredicted RBP14.44□□□□□ -0.1
SKA3-201ENST00000298260 ACP6Q9NPH0 428 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 TTC7AQ9ULT0 858 aaPredicted RBP14.44□□□□□ -0.1
SKA3-201ENST00000298260 PHTF1Q9UMS5 762 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 NAALADL1Q9UQQ1 740 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 POTEFA5A3E0 1075 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 PALM3A6NDB9 673 aaPredicted RBP14.44□□□□□ -0.1
SKA3-201ENST00000298260 SIGLEC16A6NMB1 481 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 POTEIP0CG38 1075 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 YY1P25490 414 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 GSTT1P30711 240 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 PRKCIP41743 596 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 JAM2P57087 298 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 DRAP1Q14919 205 aaPredicted RBP14.44□□□□□ -0.1
SKA3-201ENST00000298260 TMED2Q15363 201 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 SGSM1Q2NKQ1 1148 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 TMEM119Q4V9L6 283 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 LRRC23Q53EV4 343 aaPredicted RBP14.44□□□□□ -0.1
SKA3-201ENST00000298260 POTEGQ6S5H5 508 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 POTEEQ6S8J3 1075 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 BTNL9Q6UXG8 535 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 NBPF5PQ86XG9 351 aaPredicted RBP14.44□□□□□ -0.1
SKA3-201ENST00000298260 MAIP1Q8WWC4 291 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 ART4Q93070 314 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 PRR11Q96HE9 360 aaPredicted RBP14.44□□□□□ -0.1
SKA3-201ENST00000298260 NAP1L3Q99457 506 aaPredicted RBP14.44□□□□□ -0.1
SKA3-201ENST00000298260 C12orf65Q9H3J6 166 aaKnown RBP14.44□□□□□ -0.1
SKA3-201ENST00000298260 CTTNBP2NLQ9P2B4 639 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 SCOCQ9UIL1 159 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 DCTN4Q9UJW0 460 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 BZW2Q9Y6E2 419 aaKnown RBP14.44□□□□□ -0.1
SKA3-201ENST00000298260 WASF2Q9Y6W5 498 aa14.44□□□□□ -0.1
SKA3-201ENST00000298260 PLA2G4BP0C869 781 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 FGFR1P11362 822 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 OVGP1Q12889 678 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 UBE4AQ14139 1066 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 KPNB1Q14974 876 aaKnown RBP14.43□□□□□ -0.1
SKA3-201ENST00000298260 ARHGAP27Q6ZUM4 889 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 C3orf67Q6ZVT6 689 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 C4orf33Q8N1A6 199 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 SLC30A5Q8TAD4 765 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 HAS1Q92839 578 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 TMEM165Q9HC07 324 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 BSDC1Q9NW68 430 aaPredicted RBP14.43□□□□□ -0.1
SKA3-201ENST00000298260 ASIC3Q9UHC3 531 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 LNPEPQ9UIQ6 1025 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 TAF1P21675 1872 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 WDR91A4D1P6 747 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 CAPN9O14815 690 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 STAT1P42224 750 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 PARP6Q2NL67 630 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 ARSHQ5FYA8 562 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 CYP4F22Q6NT55 531 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 CLEC10AQ8IUN9 316 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 SLC35C1Q96A29 364 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 FAM84BQ96KN1 310 aaPredicted RBP14.43□□□□□ -0.1
SKA3-201ENST00000298260 NKIRAS1Q9NYS0 192 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 USH1CQ9Y6N9 552 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 PITPNM2Q9BZ72 1349 aa14.43□□□□□ -0.1
SKA3-201ENST00000298260 TBX10O75333 385 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms