RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 CATIPQ7Z7H3 387 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 ZNF605Q86T29 641 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 SLCO6A1Q86UG4 719 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 NLRX1Q86UT6 975 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 C11orf74Q86VG3 221 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 SCUBE1Q8IWY4 988 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 ZNF713Q8N859 430 aaPredicted RBP5.28□□□□□ -1.56
CD44-202ENST00000278385 LSMEM1Q8N8F7 131 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 KCNN1Q92952 543 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 TRIM63Q969Q1 353 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 HVCN1Q96D96 273 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 WDR12Q9GZL7 423 aaKnown RBP5.28□□□□□ -1.56
CD44-202ENST00000278385 UNC45AQ9H3U1 944 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 TRIM39Q9HCM9 518 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 PDLIM7Q9NR12 457 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 ARHGEF4Q9NR80 690 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 IMPACTQ9P2X3 320 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 SUSD2Q9UGT4 822 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 NUDT5Q9UKK9 219 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 DNM3Q9UQ16 869 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 MAGED1Q9Y5V3 778 aaPredicted RBP5.28□□□□□ -1.56
CD44-202ENST00000278385 ATRNO75882 1429 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 BRD4O60885 1362 aaPredicted RBP5.28□□□□□ -1.56
CD44-202ENST00000278385 TULP4Q9NRJ4 1543 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 EVC2Q86UK5 1308 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 CHL1O00533 1208 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 NCAM2O15394 837 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 MEFVO15553 781 aaPredicted RBP5.27□□□□□ -1.57
CD44-202ENST00000278385 KPNA6O60684 536 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 GFPT2O94808 682 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 CD4P01730 458 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 VCAM1P19320 739 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 HOXD12P35452 270 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 IARSP41252 1262 aaKnown RBP5.27□□□□□ -1.57
CD44-202ENST00000278385 PPFIA1Q13136 1202 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 RAB3GAP1Q15042 981 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 PCBP2Q15366 365 aaKnown RBP eCLIP5.27□□□□□ -1.57
CD44-202ENST00000278385 B3GNT9Q6UX72 402 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 SPOCD1Q6ZMY3 1216 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 C4orf50Q6ZRC1 276 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 PRR23BQ6ZRT6 265 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 SYDE1Q6ZW31 735 aaPredicted RBP5.27□□□□□ -1.57
CD44-202ENST00000278385 FASTKD5Q7L8L6 764 aaKnown RBP5.27□□□□□ -1.57
CD44-202ENST00000278385 LCA5Q86VQ0 697 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 ZNF227Q86WZ6 799 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 CMTR2Q8IYT2 770 aaKnown RBP5.27□□□□□ -1.57
CD44-202ENST00000278385 LZTR1Q8N653 840 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 APPL2Q8NEU8 664 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 NSUN6Q8TEA1 469 aaKnown RBP5.27□□□□□ -1.57
CD44-202ENST00000278385 BTN2A2Q8WVV5 523 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 KCTD13Q8WZ19 329 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 HSPBAP1Q96EW2 488 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 CCDC138Q96M89 665 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 JMJD8Q96S16 334 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 CARD11Q9BXL7 1154 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 MYLK2Q9H1R3 596 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 NKX2-4Q9H2Z4 354 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 ATP6V0A4Q9HBG4 840 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 ANKEF1Q9NU02 776 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 NKIRAS2Q9NYR9 191 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 TNPO3Q9Y5L0 923 aaKnown RBP5.27□□□□□ -1.57
CD44-202ENST00000278385 SLIT2O94813 1529 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 POLR3AO14802 1390 aaPredicted RBP5.27□□□□□ -1.57
CD44-202ENST00000278385 ROCK2O75116 1388 aaKnown RBP5.27□□□□□ -1.57
CD44-202ENST00000278385 TONSLQ96HA7 1378 aa5.27□□□□□ -1.57
CD44-202ENST00000278385 FMN2Q9NZ56 1722 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 ADGRB2O60241 1585 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 TRAV20A0A0B4J274 112 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 SMTNL1A8MU46 457 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 C19orf81C9J6K1 198 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 EYA2O00167 538 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 AREL1O15033 823 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 MT-CO1P00395 513 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 ASLP04424 464 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 PLS3P13797 630 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 HSPA6P17066 643 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 ZNF131P52739 623 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 ERVK-21P61565 698 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 KRT85P78386 507 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 BTKQ06187 659 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 KCNAB2Q13303 367 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 ZNF460Q14592 562 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 TIGD5Q53EQ6 642 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 DNAJC21Q5F1R6 531 aaKnown RBP5.26□□□□□ -1.57
CD44-202ENST00000278385 YOD1Q5VVQ6 348 aaPredicted RBP5.26□□□□□ -1.57
CD44-202ENST00000278385 E4F1Q66K89 784 aaPredicted RBP5.26□□□□□ -1.57
CD44-202ENST00000278385 OGFOD2Q6N063 350 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 CYP26C1Q6V0L0 522 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 CCDC129Q6ZRS4 1044 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 SRGAP1Q7Z6B7 1085 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 CPNE8Q86YQ8 564 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 ANKRD18AQ8IVF6 992 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 BRSK2Q8IWQ3 736 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 ARL6IP6Q8N6S5 226 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 POU5F2Q8N7G0 328 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 OR2W6PQ8NHA6 318 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 DEPTORQ8TB45 409 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 SLC35G2Q8TBE7 412 aa5.26□□□□□ -1.57
CD44-202ENST00000278385 HDAC2Q92769 488 aaKnown RBP5.26□□□□□ -1.57
CD44-202ENST00000278385 DIO2Q92813 273 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms