RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 PXDNLA1KZ92 1463 aa8.45□□□□□ -1.06
LIMD1-201ENST00000273317 CASZ1Q86V15 1759 aa8.45□□□□□ -1.06
LIMD1-201ENST00000273317 KCNQ4P56696 695 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 GFPT1Q06210 699 aaPredicted RBP8.44□□□□□ -1.06
LIMD1-201ENST00000273317 HIC1Q14526 733 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 KNOP1Q1ED39 458 aaKnown RBP8.44□□□□□ -1.06
LIMD1-201ENST00000273317 CEP55Q53EZ4 464 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 DDX17Q92841 729 aaKnown RBP8.44□□□□□ -1.06
LIMD1-201ENST00000273317 FAM20AQ96MK3 541 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 TRABDQ9H4I3 376 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 CCNYL1Q8N7R7 359 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 PPHLN1Q8NEY8 458 aaKnown RBP8.44□□□□□ -1.06
LIMD1-201ENST00000273317 ADAMTS1Q9UHI8 967 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 SFMBT1Q9UHJ3 866 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 ATP1A3P13637 1013 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 DEFA1P59665 94 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 DEFA3P59666 94 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 MXD4Q14582 209 aaPredicted RBP8.44□□□□□ -1.06
LIMD1-201ENST00000273317 SLC9A5Q14940 896 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 NFRKBQ6P4R8 1299 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 DHX40Q8IX18 779 aaKnown RBP8.44□□□□□ -1.06
LIMD1-201ENST00000273317 TBC1D19Q8N5T2 526 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 COG1Q8WTW3 980 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 CMTM5Q96DZ9 223 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 DDX50Q9BQ39 737 aaKnown RBP8.44□□□□□ -1.06
LIMD1-201ENST00000273317 ZC3H13Q5T200 1668 aaKnown RBP8.44□□□□□ -1.06
LIMD1-201ENST00000273317 MYH6P13533 1939 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 SCP2P22307 547 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 PPP6R3Q5H9R7 873 aaPredicted RBP8.44□□□□□ -1.06
LIMD1-201ENST00000273317 PLD3Q8IV08 490 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 C3orf20Q8ND61 904 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 TTLL11Q8NHH1 800 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 URGCPQ8TCY9 931 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 OLFML3Q9NRN5 406 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 NGRNQ9NPE2 291 aaKnown RBP8.44□□□□□ -1.06
LIMD1-201ENST00000273317 SELENONQ9NZV5 590 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 KDM6BO15054 1643 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 HEG1Q9ULI3 1381 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 PGM1P36871 562 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 CDK8P49336 464 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 SERPINB9P50453 376 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 MECOMQ03112 1051 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 KCNB1Q14721 858 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 PADI6Q6TGC4 694 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 C10orf88Q9H8K7 445 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 SP110Q9HB58 689 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 KRR1Q13601 381 aaKnown RBP8.44□□□□□ -1.06
LIMD1-201ENST00000273317 ALX1Q15699 326 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 UGP2Q16851 508 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 MTERF2Q49AM1 385 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 LRRC8EQ6NSJ5 796 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 TMEM270Q6UE05 265 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 PRUNE1Q86TP1 453 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 EEF2KMTQ96G04 330 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 MRPL1Q9BYD6 325 aaKnown RBP8.44□□□□□ -1.06
LIMD1-201ENST00000273317 PARVAQ9NVD7 372 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 CCND1P24385 295 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 MAP4P27816 1152 aaKnown RBP8.44□□□□□ -1.06
LIMD1-201ENST00000273317 ZC3H12BQ5HYM0 836 aaKnown RBP8.44□□□□□ -1.06
LIMD1-201ENST00000273317 MTHFD1LQ6UB35 978 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 RCOR2Q8IZ40 523 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 GIMAP4Q9NUV9 329 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 LOC102724428A0A0B4J2F2 783 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 RSPH10B2B2RC85 870 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 RSPH10BP0C881 870 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 SIK1P57059 783 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 FAM83BQ5T0W9 1011 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 ZBED8Q8IZ13 594 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 C7orf31Q8N865 590 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 HIPK4Q8NE63 616 aa8.44□□□□□ -1.06
LIMD1-201ENST00000273317 PAIP2BQ9ULR5 123 aaKnown RBP8.44□□□□□ -1.06
LIMD1-201ENST00000273317 CTTNQ14247 550 aaKnown RBP8.43□□□□□ -1.06
LIMD1-201ENST00000273317 C1orf228Q6PIY5 440 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 KRT27Q7Z3Y8 459 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 SPATA21Q7Z572 469 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 SETD3Q86TU7 594 aaPredicted RBP8.43□□□□□ -1.06
LIMD1-201ENST00000273317 ADCK1Q86TW2 530 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 TRIM69Q86WT6 500 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 INTS2Q9H0H0 1204 aaKnown RBP8.43□□□□□ -1.06
LIMD1-201ENST00000273317 ZNF263O14978 683 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 PDIA2Q13087 525 aaKnown RBP8.43□□□□□ -1.06
LIMD1-201ENST00000273317 KRT72Q14CN4 511 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 TAGAPQ8N103 731 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 H2AFYO75367 372 aaKnown RBP8.43□□□□□ -1.06
LIMD1-201ENST00000273317 ELF1P32519 619 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 CARSP49589 748 aaKnown RBP8.43□□□□□ -1.06
LIMD1-201ENST00000273317 DAB2P98082 770 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 BYSLQ13895 437 aaKnown RBP8.43□□□□□ -1.06
LIMD1-201ENST00000273317 CDO1Q16878 200 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 MIGA2Q7L4E1 593 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 TLR7Q9NYK1 1049 aaKnown RBP8.43□□□□□ -1.06
LIMD1-201ENST00000273317 KCND2Q9NZV8 630 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 PSMC3IPQ9P2W1 217 aaPredicted RBP8.43□□□□□ -1.06
LIMD1-201ENST00000273317 BCORL1Q5H9F3 1711 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 ZNF521Q96K83 1311 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 GDF11O95390 407 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 PYGMP11217 842 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 CACNB1Q02641 598 aaPredicted RBP8.43□□□□□ -1.06
LIMD1-201ENST00000273317 KCNH2Q12809 1159 aa8.43□□□□□ -1.06
LIMD1-201ENST00000273317 EFL1Q7Z2Z2 1120 aaKnown RBP8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms