RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 NMT1P30419 496 aaKnown RBP9.45□□□□□ -0.9
VPS4B-201ENST00000238497 SREBF1P36956 1147 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 CASP5P51878 434 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 ACTR2P61160 394 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 WNT8BQ93098 351 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 JAKMIP2Q96AA8 810 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 SPAG5Q96R06 1193 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 LSM14BQ9BX40 385 aaKnown RBP9.45□□□□□ -0.9
VPS4B-201ENST00000238497 NT5C3AQ9H0P0 336 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 CUEDC2Q9H467 287 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 THAP9Q9H5L6 903 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 ZNF576Q9H609 170 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 NHEJ1Q9H9Q4 299 aaPredicted RBP9.45□□□□□ -0.9
VPS4B-201ENST00000238497 ARGLU1Q9NWB6 273 aaPredicted RBP9.45□□□□□ -0.9
VPS4B-201ENST00000238497 TET1Q8NFU7 2136 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 GOLGA6L9A6NEM1 432 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 IPO5O00410 1097 aaKnown RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 MAFGO15525 162 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 MYBP10242 640 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 FXR2P51116 673 aaKnown RBP eCLIP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 STAT5BP51692 787 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 FAM193AP78312 1265 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 SMAD3P84022 425 aaKnown RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 PPP2R2DQ66LE6 453 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 LMBR1Q8WVP7 490 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 TRAPPC12Q8WVT3 735 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 DHX38Q92620 1227 aaKnown RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 CDX2Q99626 313 aaPredicted RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 PRDM12Q9H4Q4 367 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 PCIF1Q9H4Z3 704 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 GSTTP1A0A1W2PQM5 241 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 CTIFO43310 598 aaKnown RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 PNMA6AP0CW24 399 aaPredicted RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 GTF2F1P35269 517 aaKnown RBP eCLIP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 CYLC1P35663 651 aaPredicted RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 KIF5AQ12840 1032 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 PTK7Q13308 1070 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 PDIA5Q14554 519 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 SKIV2LQ15477 1246 aaKnown RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 VWA3BQ502W6 1294 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 SWSAP1Q6NVH7 229 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 EIF2AK1Q9BQI3 630 aaKnown RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 REEP2Q9BRK0 252 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 AGO4Q9HCK5 861 aaKnown RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 FRMPD4Q14CM0 1322 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 PHACTR2O75167 634 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 FGFR1OPO95684 399 aaKnown RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 INSRRP14616 1297 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 EIF4A3P38919 411 aaKnown RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 FKBP3Q00688 224 aaKnown RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 ITGB3BPQ13352 177 aaPredicted RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 HIC1Q14526 733 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 GRIN2CQ14957 1233 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 CCDC85BQ15834 202 aaPredicted RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 GRIK4Q16099 956 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 PPP4R3AQ6IN85 833 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 ZNF771Q7L3S4 317 aaPredicted RBP9.44□□□□□ -0.9
VPS4B-201ENST00000238497 RSPH3Q86UC2 560 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 SLFN12Q8IYM2 578 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 METTL13Q8N6R0 699 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 DBF4BQ8NFT6 615 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 HERVK_113Q902F9 699 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 LACRTQ9GZZ8 138 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 SCN10AQ9Y5Y9 1956 aa9.44□□□□□ -0.9
VPS4B-201ENST00000238497 PRRC2BQ5JSZ5 2229 aaKnown RBP9.43□□□□□ -0.9
VPS4B-201ENST00000238497 LRRC53A6NM62 1247 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 HAS3O00219 553 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 CETN3O15182 167 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 TLL1O43897 1013 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 CSPG5O95196 566 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 GHRP10912 638 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 GCFC2P16383 781 aaKnown RBP9.43□□□□□ -0.9
VPS4B-201ENST00000238497 CYP11B2P19099 503 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 NOP2P46087 812 aaKnown RBP9.43□□□□□ -0.9
VPS4B-201ENST00000238497 IKBKEQ14164 716 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 RAB30Q15771 203 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 DNAJB3Q8WWF6 145 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 ELMO3Q96BJ8 720 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 GAS2L1Q99501 681 aaPredicted RBP9.43□□□□□ -0.9
VPS4B-201ENST00000238497 LRRC27Q9C0I9 530 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 TTYH1Q9H313 450 aaPredicted RBP9.43□□□□□ -0.9
VPS4B-201ENST00000238497 MYH15Q9Y2K3 1946 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 ERICH4A6NGS2 130 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 ZNF185O15231 689 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 PFKMP08237 780 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 TNNT3P45378 269 aaPredicted RBP9.43□□□□□ -0.9
VPS4B-201ENST00000238497 CLCN6P51797 869 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 GFPT1Q06210 699 aaPredicted RBP9.43□□□□□ -0.9
VPS4B-201ENST00000238497 FAM160B1Q5W0V3 765 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 SCLT1Q96NL6 688 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 NAPGQ99747 312 aaPredicted RBP9.43□□□□□ -0.9
VPS4B-201ENST00000238497 RUSC1Q9BVN2 902 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 IFIH1Q9BYX4 1025 aaKnown RBP9.43□□□□□ -0.9
VPS4B-201ENST00000238497 SMARCAL1Q9NZC9 954 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 KAT6AQ92794 2004 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 M0QZ92 97 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 KRT86O43790 486 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 USO1O60763 962 aaKnown RBP9.43□□□□□ -0.9
VPS4B-201ENST00000238497 CA3P07451 260 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 MAGEA1P43355 309 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms