RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 ZSWIM2Q8NEG5 633 aa18.88■□□□□ 0.61
VRK1-201ENST00000216639 CCDC127Q96BQ5 260 aa18.88■□□□□ 0.61
VRK1-201ENST00000216639 TMEM117Q9H0C3 514 aa18.88■□□□□ 0.61
VRK1-201ENST00000216639 TMEM8AQ9HCN3 771 aa18.88■□□□□ 0.61
VRK1-201ENST00000216639 VTA1Q9NP79 307 aa18.88■□□□□ 0.61
VRK1-201ENST00000216639 USP20Q9Y2K6 914 aa18.88■□□□□ 0.61
VRK1-201ENST00000216639 ZNFX1Q9P2E3 1918 aaKnown RBP18.87■□□□□ 0.61
VRK1-201ENST00000216639 CTAGE15A4D2H0 777 aa18.87■□□□□ 0.61
VRK1-201ENST00000216639 EXTL3O43909 919 aa18.87■□□□□ 0.61
VRK1-201ENST00000216639 CTAGE8P0CG41 777 aa18.87■□□□□ 0.61
VRK1-201ENST00000216639 TEX35Q5T0J7 233 aa18.87■□□□□ 0.61
VRK1-201ENST00000216639 PHLDB3Q6NSJ2 640 aa18.87■□□□□ 0.61
VRK1-201ENST00000216639 RSRC2Q7L4I2 434 aaKnown RBP18.87■□□□□ 0.61
VRK1-201ENST00000216639 ZNF467Q7Z7K2 595 aaPredicted RBP18.87■□□□□ 0.61
VRK1-201ENST00000216639 CTAGE6Q86UF2 777 aa18.87■□□□□ 0.61
VRK1-201ENST00000216639 CTAGE4Q8IX94 777 aa18.87■□□□□ 0.61
VRK1-201ENST00000216639 PLEKHO2Q8TD55 490 aa18.87■□□□□ 0.61
VRK1-201ENST00000216639 RABGGTAQ92696 567 aa18.87■□□□□ 0.61
VRK1-201ENST00000216639 ARGLU1Q9NWB6 273 aaPredicted RBP18.87■□□□□ 0.61
VRK1-201ENST00000216639 STYXL1Q9Y6J8 313 aa18.87■□□□□ 0.61
VRK1-201ENST00000216639 BTNL10A8MVZ5 291 aa18.86■□□□□ 0.61
VRK1-201ENST00000216639 TULP1O00294 542 aaPredicted RBP18.86■□□□□ 0.61
VRK1-201ENST00000216639 LDHAP00338 332 aaKnown RBP18.86■□□□□ 0.61
VRK1-201ENST00000216639 MARK3P27448 753 aa18.86■□□□□ 0.61
VRK1-201ENST00000216639 EFNA5P52803 228 aa18.86■□□□□ 0.61
VRK1-201ENST00000216639 CKAP4Q07065 602 aaKnown RBP18.86■□□□□ 0.61
VRK1-201ENST00000216639 LAMC2Q13753 1193 aa18.86■□□□□ 0.61
VRK1-201ENST00000216639 MXD4Q14582 209 aaPredicted RBP18.86■□□□□ 0.61
VRK1-201ENST00000216639 ALKBH5Q6P6C2 394 aaKnown RBP18.86■□□□□ 0.61
VRK1-201ENST00000216639 GPR161Q8N6U8 529 aaKnown RBP18.86■□□□□ 0.61
VRK1-201ENST00000216639 FAM213AQ9BRX8 229 aa18.86■□□□□ 0.61
VRK1-201ENST00000216639 UBE2TQ9NPD8 197 aaPredicted RBP18.86■□□□□ 0.61
VRK1-201ENST00000216639 PUF60Q9UHX1 559 aaKnown RBP18.86■□□□□ 0.61
VRK1-201ENST00000216639 NAGPAQ9UK23 515 aa18.86■□□□□ 0.61
VRK1-201ENST00000216639 CAPN6Q9Y6Q1 641 aa18.86■□□□□ 0.61
VRK1-201ENST00000216639 LRRIQ3A6PVS8 624 aaPredicted RBP18.86■□□□□ 0.61
VRK1-201ENST00000216639 RRP9O43818 475 aaKnown RBP18.86■□□□□ 0.61
VRK1-201ENST00000216639 ADCY3O60266 1144 aa18.86■□□□□ 0.61
VRK1-201ENST00000216639 IFI16Q16666 785 aaKnown RBP18.86■□□□□ 0.61
VRK1-201ENST00000216639 ARHGAP44Q17R89 818 aa18.86■□□□□ 0.61
VRK1-201ENST00000216639 PDCL3Q9H2J4 239 aa18.86■□□□□ 0.61
VRK1-201ENST00000216639 TSKSQ9UJT2 592 aa18.86■□□□□ 0.61
VRK1-201ENST00000216639 AGO2Q9UKV8 859 aaKnown RBP18.86■□□□□ 0.61
VRK1-201ENST00000216639 INTUQ9ULD6 942 aa18.86■□□□□ 0.61
VRK1-201ENST00000216639 HBP1O60381 514 aa18.85■□□□□ 0.61
VRK1-201ENST00000216639 PRLRP16471 622 aa18.85■□□□□ 0.61
VRK1-201ENST00000216639 MAP2K1Q02750 393 aaPredicted RBP18.85■□□□□ 0.61
VRK1-201ENST00000216639 CAPSQ13938 189 aa18.85■□□□□ 0.61
VRK1-201ENST00000216639 PLCB4Q15147 1175 aa18.85■□□□□ 0.61
VRK1-201ENST00000216639 PSPC1Q8WXF1 523 aaKnown RBP18.85■□□□□ 0.61
VRK1-201ENST00000216639 GPR88Q9GZN0 384 aa18.85■□□□□ 0.61
VRK1-201ENST00000216639 PDGFCQ9NRA1 345 aa18.85■□□□□ 0.61
VRK1-201ENST00000216639 HDAC6Q9UBN7 1215 aa18.85■□□□□ 0.61
VRK1-201ENST00000216639 TRPC6Q9Y210 931 aa18.85■□□□□ 0.61
VRK1-201ENST00000216639 COQ4Q9Y3A0 265 aa18.85■□□□□ 0.61
VRK1-201ENST00000216639 PLXNB2O15031 1838 aa18.84■□□□□ 0.61
VRK1-201ENST00000216639 GH1P01241 217 aa18.84■□□□□ 0.61
VRK1-201ENST00000216639 MATR3P43243 847 aaKnown RBP eCLIP18.84■□□□□ 0.618e-6■□□□□ 8.9
VRK1-201ENST00000216639 MFAP3P55082 362 aa18.84■□□□□ 0.61
VRK1-201ENST00000216639 KIF22Q14807 665 aa18.84■□□□□ 0.61
VRK1-201ENST00000216639 FAM110CQ1W6H9 321 aa18.84■□□□□ 0.61
VRK1-201ENST00000216639 DPP9Q86TI2 863 aa18.84■□□□□ 0.61
VRK1-201ENST00000216639 TRIM50Q86XT4 487 aa18.84■□□□□ 0.61
VRK1-201ENST00000216639 ZBTB8OSQ8IWT0 167 aa18.84■□□□□ 0.61
VRK1-201ENST00000216639 FBXL13Q8NEE6 735 aa18.84■□□□□ 0.61
VRK1-201ENST00000216639 PRPF31Q8WWY3 499 aaKnown RBP18.84■□□□□ 0.61
VRK1-201ENST00000216639 COPS5Q92905 334 aa18.84■□□□□ 0.61
VRK1-201ENST00000216639 RPGRIP1Q96KN7 1286 aa18.84■□□□□ 0.61
VRK1-201ENST00000216639 FNBP1Q96RU3 617 aa18.84■□□□□ 0.61
VRK1-201ENST00000216639 C2orf40Q9H1Z8 148 aa18.84■□□□□ 0.61
VRK1-201ENST00000216639 SUGCTQ9HAC7 445 aa18.84■□□□□ 0.61
VRK1-201ENST00000216639 ERAP1Q9NZ08 941 aa18.84■□□□□ 0.61
VRK1-201ENST00000216639 BUB1O43683 1085 aa18.83■□□□□ 0.61
VRK1-201ENST00000216639 H2AFZP0C0S5 128 aa18.83■□□□□ 0.61
VRK1-201ENST00000216639 PNMA6AP0CW24 399 aaPredicted RBP18.83■□□□□ 0.61
VRK1-201ENST00000216639 DLATP10515 647 aaKnown RBP18.83■□□□□ 0.61
VRK1-201ENST00000216639 TCP1P17987 556 aaKnown RBP18.83■□□□□ 0.61
VRK1-201ENST00000216639 KLRC1P26715 233 aa18.83■□□□□ 0.61
VRK1-201ENST00000216639 MAPK4P31152 587 aa18.83■□□□□ 0.61
VRK1-201ENST00000216639 GPC3P51654 580 aa18.83■□□□□ 0.61
VRK1-201ENST00000216639 H2AFVQ71UI9 128 aa18.83■□□□□ 0.61
VRK1-201ENST00000216639 GPR142Q7Z601 462 aa18.83■□□□□ 0.61
VRK1-201ENST00000216639 FAM81BQ96LP2 452 aa18.83■□□□□ 0.61
VRK1-201ENST00000216639 SNX12Q9UMY4 172 aa18.83■□□□□ 0.61
VRK1-201ENST00000216639 SIP14410 1827 aa18.83■□□□□ 0.61
VRK1-201ENST00000216639 IGKV6-21A0A0C4DH24 114 aa18.83■□□□□ 0.6
VRK1-201ENST00000216639 RBM47A0AV96 593 aaKnown RBP18.83■□□□□ 0.6
VRK1-201ENST00000216639 FOXN3O00409 490 aaPredicted RBP18.83■□□□□ 0.6
VRK1-201ENST00000216639 TNFAIP3P21580 790 aa18.83■□□□□ 0.6
VRK1-201ENST00000216639 TFDP1Q14186 410 aa18.83■□□□□ 0.6
VRK1-201ENST00000216639 PSMD6Q15008 389 aa18.83■□□□□ 0.6
VRK1-201ENST00000216639 TAPT1Q6NXT6 567 aa18.83■□□□□ 0.6
VRK1-201ENST00000216639 ZPBP2Q6X784 338 aa18.83■□□□□ 0.6
VRK1-201ENST00000216639 ARHGEF19Q8IW93 802 aa18.83■□□□□ 0.6
VRK1-201ENST00000216639 NT5C1BQ96P26 610 aa18.83■□□□□ 0.6
VRK1-201ENST00000216639 MSTO1Q9BUK6 570 aa18.83■□□□□ 0.6
VRK1-201ENST00000216639 RAB20Q9NX57 234 aa18.83■□□□□ 0.6
VRK1-201ENST00000216639 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.83■□□□□ 0.6
VRK1-201ENST00000216639 SLC5A4Q9NY91 659 aa18.83■□□□□ 0.6
VRK1-201ENST00000216639 SALL4Q9UJQ4 1053 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms