RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	FBXO18	Q8NFZ0	1043 aa		11.45	□□□□□ -0.58
SCN1A-222	ENST00000642141	PGBD4	Q96DM1	585 aa		11.45	□□□□□ -0.58
SCN1A-222	ENST00000642141	RPGRIP1	Q96KN7	1286 aa		11.45	□□□□□ -0.58
SCN1A-222	ENST00000642141	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.45	□□□□□ -0.58
SCN1A-222	ENST00000642141	MRPL9	Q9BYD2	267 aa	Known RBP	11.45	□□□□□ -0.58
SCN1A-222	ENST00000642141	POLR3F	Q9H1D9	316 aa	Predicted RBP	11.45	□□□□□ -0.58
SCN1A-222	ENST00000642141	RNF39	Q9H2S5	420 aa		11.45	□□□□□ -0.58
SCN1A-222	ENST00000642141	ANKEF1	Q9NU02	776 aa		11.45	□□□□□ -0.58
SCN1A-222	ENST00000642141	LZTS1	Q9Y250	596 aa		11.45	□□□□□ -0.58
SCN1A-222	ENST00000642141	PPME1	Q9Y570	386 aa		11.45	□□□□□ -0.58
SCN1A-222	ENST00000642141	TRIO	O75962	3097 aa		11.45	□□□□□ -0.58
SCN1A-222	ENST00000642141	C2orf71	A6NGG8	1288 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	C19orf67	A6NJJ6	358 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	B4GALT5	O43286	388 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	TSPAN1	O60635	241 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	ZNF623	O75123	536 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	LYPLA2	O95372	231 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	EYA4	O95677	639 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	GALT	P07902	379 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	OR52Z1	P0C646	297 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	LIG1	P18858	919 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	GLRA2	P23416	452 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	ARL2	P36404	184 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	SLC11A1	P49279	550 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	RBM25	P49756	843 aa	Known RBP	11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	RAB27A	P51159	221 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	PTEN	P60484	403 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	COASY	Q13057	564 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	CAPS	Q13938	189 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	TFDP1	Q14186	410 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	MXD4	Q14582	209 aa	Predicted RBP	11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	SMC1A	Q14683	1233 aa	Known RBP	11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	MRPL10	Q7Z7H8	261 aa	Known RBP	11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	NOSTRIN	Q8IVI9	506 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	TMEM87A	Q8NBN3	555 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	SMRP1	Q8NCR6	262 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	SMG8	Q8ND04	991 aa	Known RBP	11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	URGCP	Q8TCY9	931 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	TMEM169	Q96HH4	297 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	TRAIP	Q9BWF2	469 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	FOXP1	Q9H334	677 aa	Predicted RBP	11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	NGRN	Q9NPE2	291 aa	Known RBP	11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	PRKAG3	Q9UGI9	489 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	MUTYH	Q9UIF7	546 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	USP20	Q9Y2K6	914 aa		11.44	□□□□□ -0.58
SCN1A-222	ENST00000642141	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	LRRIQ4	A6NIV6	560 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	DCX	O43602	365 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	GAS2	O43903	313 aa	Known RBP	11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	CLASP2	O75122	1294 aa	Known RBP	11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	DGAT1	O75907	488 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	WEE2	P0C1S8	567 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	MYB	P10242	640 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	ITGA4	P13612	1032 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	ALAD	P13716	330 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	AKAP5	P24588	427 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	HMGN5	P82970	282 aa	Known RBP	11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	MBTD1	Q05BQ5	628 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	NCBP1	Q09161	790 aa	Known RBP	11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	MCTP1	Q6DN14	999 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	ANKRD54	Q6NXT1	300 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	RNF135	Q8IUD6	432 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	C12orf76	Q8N812	135 aa	Predicted RBP	11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	RABGGTA	Q92696	567 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	IGSF21	Q96ID5	467 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	ZFP42	Q96MM3	310 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	FAM193B	Q96PV7	902 aa	Predicted RBP	11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	GAD1	Q99259	594 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	VN1R3	Q9BXE9	311 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	RSAD1	Q9HA92	442 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	KLK14	Q9P0G3	267 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	IPP	Q9Y573	584 aa		11.43	□□□□□ -0.58
SCN1A-222	ENST00000642141	ARL5C	A6NH57	179 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	C2CD2L	O14523	706 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	GPR37L1	O60883	481 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	CD2BP2	O95400	341 aa	Known RBP	11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	NPTXR	O95502	500 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	ARF4	P18085	180 aa	Predicted RBP	11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	CCT6A	P40227	531 aa	Known RBP	11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	MLH1	P40692	756 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	TOB1	P50616	345 aa	Predicted RBP	11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	ECM1	Q16610	540 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	NOTUM	Q6P988	496 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	SYCE2	Q6PIF2	218 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	PADI6	Q6TGC4	694 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	TAS1R1	Q7RTX1	841 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	ERMN	Q8TAM6	284 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	FEZF2	Q8TBJ5	459 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	BSND	Q8WZ55	320 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	NACC1	Q96RE7	527 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	POP1	Q99575	1024 aa	Known RBP	11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	CDCA3	Q99618	268 aa	Predicted RBP	11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	TRIM6	Q9C030	488 aa	Predicted RBP	11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	CSRNP2	Q9H175	543 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	S1PR5	Q9H228	398 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	NXF3	Q9H4D5	531 aa	Known RBP	11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	TUFT1	Q9NNX1	390 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	TSHZ2	Q9NRE2	1034 aa		11.42	□□□□□ -0.58
SCN1A-222	ENST00000642141	MIOS	Q9NXC5	875 aa		11.42	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms