RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 HSP90AA2PQ14568 343 aaPredicted RBP1.07□□□□□ -2.24
VPS35-212ENST00000640313 CRY1Q16526 586 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 BMT2Q1RMZ1 405 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 FAM214AQ32MH5 1076 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 PDCD4Q53EL6 469 aaKnown RBP1.07□□□□□ -2.24
VPS35-212ENST00000640313 MTX3Q5HYI7 312 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 Q6ZNX1 250 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 TECPR1Q7Z6L1 1165 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 ZNF654Q8IZM8 581 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 KRT78Q8N1N4 520 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 HIPK4Q8NE63 616 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 SEMA6DQ8NFY4 1073 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 OR5AN1Q8NGI8 311 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 PCDH19Q8TAB3 1148 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 ADAMTS15Q8TE58 950 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 CPLX3Q8WVH0 158 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 DDB2Q92466 427 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 DLG3Q92796 817 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 RPL36ALQ969Q0 106 aaKnown RBP1.07□□□□□ -2.24
VPS35-212ENST00000640313 OSBP2Q969R2 916 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 FOXRED1Q96CU9 486 aaPredicted RBP1.07□□□□□ -2.24
VPS35-212ENST00000640313 GPRASP2Q96D09 838 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 SEC16BQ96JE7 1060 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 WDR92Q96MX6 357 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 UROC1Q96N76 676 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 FOXB1Q99853 325 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 LSM14BQ9BX40 385 aaKnown RBP1.07□□□□□ -2.24
VPS35-212ENST00000640313 TEX101Q9BY14 249 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 OSBPL6Q9BZF3 934 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 BCL11AQ9H165 835 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 ACSS2Q9NR19 701 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 KCNH7Q9NS40 1196 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 CATSPERZQ9NTU4 200 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 KCMF1Q9P0J7 381 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 RNF181Q9P0P0 153 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 NCDNQ9UBB6 729 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 MAGEL2Q9UJ55 1249 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 STRIP2Q9ULQ0 834 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 CBLCQ9ULV8 474 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 FPGT-TNNI3KV9GXZ4 949 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 ASXL2Q76L83 1435 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 NOTCH4Q99466 2003 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 CCDC187A0A096LP49 1063 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 ARVCFO00192 962 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 NRP1O14786 923 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 CDKL5O76039 1030 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 SPATA31D3P0C874 917 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 PYGMP11217 842 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 KRT15P19012 456 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 GJA8P48165 433 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 POLGP54098 1239 aaPredicted RBP1.06□□□□□ -2.24
VPS35-212ENST00000640313 MRPS35P82673 323 aaKnown RBP1.06□□□□□ -2.24
VPS35-212ENST00000640313 MXRA7P84157 204 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 NHLH2Q02577 135 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 RESTQ13127 1097 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 LAMB3Q13751 1172 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 SLC10A6Q3KNW5 377 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 ZNF326Q5BKZ1 582 aaKnown RBP1.06□□□□□ -2.24
VPS35-212ENST00000640313 METRNLQ641Q3 311 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 MRM1Q6IN84 353 aaKnown RBP1.06□□□□□ -2.24
VPS35-212ENST00000640313 BTNL9Q6UXG8 535 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 SPATA31D4Q6ZUB0 917 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 EEPD1Q7L9B9 569 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 GPR149Q86SP6 731 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 RTN4RL1Q86UN2 441 aaPredicted RBP1.06□□□□□ -2.24
VPS35-212ENST00000640313 SYT12Q8IV01 421 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 NOSTRINQ8IVI9 506 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 SARAFQ96BY9 339 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 SGSM3Q96HU1 749 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 DYDC2Q96IM9 177 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 Q96MF0 132 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 BHMT2Q9H2M3 363 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 POLR3BQ9NW08 1133 aaPredicted RBP1.06□□□□□ -2.24
VPS35-212ENST00000640313 LRIT1Q9P2V4 623 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 B3GALT1Q9Y5Z6 326 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 AOX1Q06278 1338 aa1.06□□□□□ -2.24
VPS35-212ENST00000640313 IGKV2D-30A0A075B6S6 120 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 MANSC4A6NHS7 340 aaPredicted RBP1.05□□□□□ -2.24
VPS35-212ENST00000640313 B2RBV5 119 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 SCDO00767 359 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 AQP7O14520 342 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 PRODHO43272 600 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 DDAH1O94760 285 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 RASGRP1O95267 797 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 CFBP00751 764 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 CFIP05156 583 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 PRR35P0CG20 571 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 RBP3P10745 1247 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 PABPC1P11940 636 aaKnown RBP1.05□□□□□ -2.24
VPS35-212ENST00000640313 HNRNPLP14866 589 aaKnown RBP eCLIP1.05□□□□□ -2.24
VPS35-212ENST00000640313 NAT1P18440 290 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 KELP23276 732 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 MGAT1P26572 445 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 SOX10P56693 466 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 ROM1Q03395 351 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 IFRD2Q12894 506 aaPredicted RBP1.05□□□□□ -2.24
VPS35-212ENST00000640313 KLF9Q13886 244 aaPredicted RBP1.05□□□□□ -2.24
VPS35-212ENST00000640313 LLGL1Q15334 1064 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 ETFDHQ16134 617 aa1.05□□□□□ -2.24
VPS35-212ENST00000640313 FXNQ16595 210 aa1.05□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms