RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 TRIM54Q9BYV2 358 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 NUF2Q9BZD4 464 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 MYO1AQ9UBC5 1043 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 ASXL3Q9C0F0 2248 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 A0A1B0GW55 424 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 RRP9O43818 475 aaKnown RBP5.37□□□□□ -1.55
SCN1A-218ENST00000640036 PCDH8O95206 1070 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 DUX4L2P0CJ85 424 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 DUX4L3P0CJ86 424 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 DUX4L4P0CJ87 422 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 DUX4L5P0CJ88 424 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 DUX4L6P0CJ89 424 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 DUX4L7P0CJ90 424 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 LAG3P18627 525 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 GSDMDP57764 484 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 UAP1L1Q3KQV9 507 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 OTOP3Q7RTS5 596 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 MYLK4Q86YV6 388 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-218ENST00000640036 GBP7Q8N8V2 638 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-218ENST00000640036 TIPINQ9BVW5 301 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 PLA2G12BQ9BX93 195 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 BCO2Q9BYV7 579 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 ABCF3Q9NUQ8 709 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 DUX4Q9UBX2 424 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 A0A1B0GVL5 298 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 PFKMP08237 780 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 AP3M2P53677 418 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 OXCT1P55809 520 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 PATL1Q86TB9 770 aaKnown RBP5.37□□□□□ -1.55
SCN1A-218ENST00000640036 TICAM2Q86XR7 235 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.37□□□□□ -1.55
SCN1A-218ENST00000640036 SLC32A1Q9H598 525 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 ASAH2Q9NR71 780 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 MAPK8IP1Q9UQF2 711 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 TRPV2Q9Y5S1 764 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 PRPSAP2O60256 369 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 GSTA1P08263 222 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 GSTA2P09210 222 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 ZNF235Q14590 738 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 PLPP4Q5VZY2 271 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 LRRC69Q6ZNQ3 347 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 OMDQ99983 421 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 TRIM7Q9C029 511 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 KIAA1683Q9H0B3 1180 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 FAM217BQ9NTX9 383 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-218ENST00000640036 MTMR4Q9NYA4 1195 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 SPG21Q9NZD8 308 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 ZNF212Q9UDV6 495 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 HEMK1Q9Y5R4 338 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-218ENST00000640036 MEIS1O00470 390 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 TLR2O60603 784 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 ICAM1P05362 532 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 ALPPL2P10696 532 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 UBE2HP62256 183 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 DDR1Q08345 913 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 PAK1Q13153 545 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 DNAAF3Q8N9W5 541 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 TDRD5Q8NAT2 981 aaKnown RBP5.37□□□□□ -1.55
SCN1A-218ENST00000640036 BANK1Q8NDB2 785 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 U2AF1L4Q8WU68 220 aaKnown RBP5.37□□□□□ -1.55
SCN1A-218ENST00000640036 SUSD6Q92537 303 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 KCNH3Q9ULD8 1083 aa5.37□□□□□ -1.55
SCN1A-218ENST00000640036 ZMYM2Q9UBW7 1377 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 IQGAP3Q86VI3 1631 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 H7C0C1 242 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 FGF19O95750 216 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 DSG3P32926 999 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 TCF7P36402 384 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 ATP5OP48047 213 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 RPS6P62753 249 aaKnown RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 ARID5BQ14865 1188 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 UAP1Q16222 522 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 PADI6Q6TGC4 694 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 PI16Q6UXB8 463 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 KDELC2Q7Z4H8 507 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 STMN2Q93045 179 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 CCDC124Q96CT7 223 aaKnown RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 RIC8AQ9NPQ8 531 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 STK17AQ9UEE5 414 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 GLUD1P00367 558 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 ATP5BP06576 529 aaKnown RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 ZSCAN22P10073 491 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 HOXA10P31260 410 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 CASQ1P31415 396 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 CTTNQ14247 550 aaKnown RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 C10orf120Q5SQS8 335 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 PPP4R4Q6NUP7 873 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 CCHCR1Q8TD31 782 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 LARP4BQ92615 738 aaKnown RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 USP13Q92995 863 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 NSUN4Q96CB9 384 aaKnown RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 UTP6Q9NYH9 597 aaKnown RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 THEGQ9P2T0 379 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 INSL6Q9Y581 213 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 GPR75-ASB3A0A0A6YYF3 556 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 ADCY6O43306 1168 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 MOCS2O96007 188 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 DDIT3P35638 169 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 MNAT1P51948 309 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 CRHR2Q13324 411 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 129.2 ms