RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 RSAD2Q8WXG1 361 aa16.81■□□□□ 0.28
SYNE2-228ENST00000639659 SLC7A3Q8WY07 619 aa16.81■□□□□ 0.28
SYNE2-228ENST00000639659 TMEM143Q96AN5 459 aa16.81■□□□□ 0.28
SYNE2-228ENST00000639659 CEP89Q96ST8 783 aa16.81■□□□□ 0.28
SYNE2-228ENST00000639659 JPH2Q9BR39 696 aaPredicted RBP16.81■□□□□ 0.28
SYNE2-228ENST00000639659 TRAIPQ9BWF2 469 aa16.81■□□□□ 0.28
SYNE2-228ENST00000639659 CA14Q9ULX7 337 aa16.81■□□□□ 0.28
SYNE2-228ENST00000639659 SNX14Q9Y5W7 946 aa16.81■□□□□ 0.28
SYNE2-228ENST00000639659 FAM186AA6NE01 2351 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 NRP1O14786 923 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 ZNF623O75123 536 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 ALDH2P05091 517 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 NPR3P17342 541 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 RPS6KB1P23443 525 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 ID4P47928 161 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 PSMC5P62195 406 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 FOXK2Q01167 660 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 NTRK3Q16288 839 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 ANO5Q75V66 913 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 GLYCTKQ8IVS8 523 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 DTWD2Q8NBA8 298 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 CEP170P1Q96L14 293 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 RTP3Q9BQQ7 232 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 APOL6Q9BWW8 343 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 C22orf23Q9BZE7 217 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 DDX25Q9UHL0 483 aaKnown RBP16.8■□□□□ 0.28
SYNE2-228ENST00000639659 PCDHA4Q9UN74 947 aa16.8■□□□□ 0.28
SYNE2-228ENST00000639659 RIF1Q5UIP0 2472 aaKnown RBP16.8■□□□□ 0.28
SYNE2-228ENST00000639659 CCDC195A0A1B0GUA6 201 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 INPPL1O15357 1258 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 ADH1AP07327 375 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 SPATA31D3P0C874 917 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 IFNAR1P17181 557 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 SSRP1Q08945 709 aaKnown RBP16.79■□□□□ 0.28
SYNE2-228ENST00000639659 INF2Q27J81 1249 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 SPECC1Q5M775 1068 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 ELMSAN1Q6PJG2 1045 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 SPATA31D4Q6ZUB0 917 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 BLIDQ8IZY5 108 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 ST13P5Q8NFI4 369 aaPredicted RBP16.79■□□□□ 0.28
SYNE2-228ENST00000639659 PSPC1Q8WXF1 523 aaKnown RBP16.79■□□□□ 0.28
SYNE2-228ENST00000639659 RIN2Q8WYP3 895 aaPredicted RBP16.79■□□□□ 0.28
SYNE2-228ENST00000639659 TMEM175Q9BSA9 504 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 HERC2P3Q9BVR0 1158 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 MINDY3Q9H8M7 445 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 PIDD1Q9HB75 910 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 IFT122Q9HBG6 1241 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 SH3GLB2Q9NR46 395 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 KANSL3Q9P2N6 904 aa16.79■□□□□ 0.28
SYNE2-228ENST00000639659 CLUHO75153 1309 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 CNTNAP2Q9UHC6 1331 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 EML1O00423 815 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 CPLX1O14810 134 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 TEX28O15482 410 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 SLC37A4O43826 429 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 MARCH6O60337 910 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 RFPL2O75678 378 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 ERLIN2O94905 339 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 GLUD1P00367 558 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 SOD2P04179 222 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 ITGA4P13612 1032 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 PDIA3P30101 505 aaKnown RBP16.78■□□□□ 0.28
SYNE2-228ENST00000639659 MLH1P40692 756 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 GLUD2P49448 558 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 NONOQ15233 471 aaKnown RBP eCLIP16.78■□□□□ 0.28
SYNE2-228ENST00000639659 C15orf39Q6ZRI6 1047 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 GET4Q7L5D6 327 aaPredicted RBP16.78■□□□□ 0.28
SYNE2-228ENST00000639659 TAS1R1Q7RTX1 841 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 ZNF579Q8NAF0 562 aaKnown RBP16.78■□□□□ 0.28
SYNE2-228ENST00000639659 ETNPPLQ8TBG4 499 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 PRPF31Q8WWY3 499 aaKnown RBP16.78■□□□□ 0.28
SYNE2-228ENST00000639659 SMG7Q92540 1137 aaKnown RBP16.78■□□□□ 0.28
SYNE2-228ENST00000639659 STAMQ92783 540 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 HINFPQ9BQA5 517 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 LARP6Q9BRS8 491 aaKnown RBP16.78■□□□□ 0.28
SYNE2-228ENST00000639659 IGSF9Q9P2J2 1179 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 STK39Q9UEW8 545 aa16.78■□□□□ 0.28
SYNE2-228ENST00000639659 N4BP1O75113 896 aaKnown RBP16.77■□□□□ 0.28
SYNE2-228ENST00000639659 QARSP47897 775 aaKnown RBP16.77■□□□□ 0.28
SYNE2-228ENST00000639659 LAMTOR4Q0VGL1 99 aa16.77■□□□□ 0.28
SYNE2-228ENST00000639659 STK3Q13188 491 aa16.77■□□□□ 0.28
SYNE2-228ENST00000639659 UBXN11Q5T124 520 aa16.77■□□□□ 0.28
SYNE2-228ENST00000639659 SRGAP1Q7Z6B7 1085 aa16.77■□□□□ 0.28
SYNE2-228ENST00000639659 PALB2Q86YC2 1186 aa16.77■□□□□ 0.28
SYNE2-228ENST00000639659 RNF149Q8NC42 400 aa16.77■□□□□ 0.28
SYNE2-228ENST00000639659 B3GALT6Q96L58 329 aa16.77■□□□□ 0.28
SYNE2-228ENST00000639659 AIFM3Q96NN9 605 aa16.77■□□□□ 0.28
SYNE2-228ENST00000639659 RPS6KC1Q96S38 1066 aa16.77■□□□□ 0.28
SYNE2-228ENST00000639659 GAD1Q99259 594 aa16.77■□□□□ 0.28
SYNE2-228ENST00000639659 MARCH5Q9NX47 278 aa16.77■□□□□ 0.28
SYNE2-228ENST00000639659 R4GN57 208 aa16.77■□□□□ 0.28
SYNE2-228ENST00000639659 CYP3A7-CYP3A51PA0A087WV96 503 aa16.76■□□□□ 0.27
SYNE2-228ENST00000639659 F8W810 466 aa16.76■□□□□ 0.27
SYNE2-228ENST00000639659 DKC1O60832 514 aaKnown RBP eCLIP16.76■□□□□ 0.27
SYNE2-228ENST00000639659 CYP3A7P24462 503 aa16.76■□□□□ 0.27
SYNE2-228ENST00000639659 PSMA5P28066 241 aa16.76■□□□□ 0.27
SYNE2-228ENST00000639659 HSPA4P34932 840 aa16.76■□□□□ 0.27
SYNE2-228ENST00000639659 SCNN1GP51170 649 aa16.76■□□□□ 0.27
SYNE2-228ENST00000639659 EMC2Q15006 297 aa16.76■□□□□ 0.27
SYNE2-228ENST00000639659 NCAPH2Q6IBW4 605 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms