RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 SMTNP53814 917 aa20.18■□□□□ 0.82
CLN3-259ENST00000637551 CSPP1Q1MSJ5 1256 aa20.18■□□□□ 0.82
CLN3-259ENST00000637551 APBB1IPQ7Z5R6 666 aaPredicted RBP20.18■□□□□ 0.82
CLN3-259ENST00000637551 MRPL10Q7Z7H8 261 aaKnown RBP20.18■□□□□ 0.82
CLN3-259ENST00000637551 DAW1Q8N136 415 aa20.18■□□□□ 0.82
CLN3-259ENST00000637551 FIBCD1Q8N539 461 aa20.18■□□□□ 0.82
CLN3-259ENST00000637551 SPRYD3Q8NCJ5 442 aa20.18■□□□□ 0.82
CLN3-259ENST00000637551 DEPTORQ8TB45 409 aa20.18■□□□□ 0.82
CLN3-259ENST00000637551 PGBD4Q96DM1 585 aa20.18■□□□□ 0.82
CLN3-259ENST00000637551 MRPL9Q9BYD2 267 aaKnown RBP20.18■□□□□ 0.82
CLN3-259ENST00000637551 LRRC27Q9C0I9 530 aa20.18■□□□□ 0.82
CLN3-259ENST00000637551 TMEM117Q9H0C3 514 aa20.18■□□□□ 0.82
CLN3-259ENST00000637551 UBN1Q9NPG3 1134 aa20.18■□□□□ 0.82
CLN3-259ENST00000637551 FAM105AQ9NUU6 356 aa20.18■□□□□ 0.82
CLN3-259ENST00000637551 A0A1B0GUA9 196 aa20.17■□□□□ 0.82
CLN3-259ENST00000637551 ACKR2O00590 384 aa20.17■□□□□ 0.82
CLN3-259ENST00000637551 UPP2O95045 317 aa20.17■□□□□ 0.82
CLN3-259ENST00000637551 PLS3P13797 630 aa20.17■□□□□ 0.82
CLN3-259ENST00000637551 DNM1Q05193 864 aaKnown RBP20.17■□□□□ 0.82
CLN3-259ENST00000637551 ZRSR1Q15695 479 aaKnown RBP20.17■□□□□ 0.82
CLN3-259ENST00000637551 AXDND1Q5T1B0 1012 aaPredicted RBP20.17■□□□□ 0.82
CLN3-259ENST00000637551 RRAGBQ5VZM2 374 aa20.17■□□□□ 0.82
CLN3-259ENST00000637551 HACE1Q8IYU2 909 aa20.17■□□□□ 0.82
CLN3-259ENST00000637551 ADAMTS19Q8TE59 1207 aa20.17■□□□□ 0.82
CLN3-259ENST00000637551 ZNF668Q96K58 619 aaPredicted RBP20.17■□□□□ 0.82
CLN3-259ENST00000637551 CLIC6Q96NY7 704 aa20.17■□□□□ 0.82
CLN3-259ENST00000637551 ASB2Q96Q27 587 aa20.17■□□□□ 0.82
CLN3-259ENST00000637551 TFIP11Q9UBB9 837 aaKnown RBP20.17■□□□□ 0.82
CLN3-259ENST00000637551 A0A087WWV3 80 aa20.16■□□□□ 0.82
CLN3-259ENST00000637551 INPPL1O15357 1258 aa20.16■□□□□ 0.82
CLN3-259ENST00000637551 MYOGP15173 224 aa20.16■□□□□ 0.82
CLN3-259ENST00000637551 NPTX2P47972 431 aa20.16■□□□□ 0.82
CLN3-259ENST00000637551 BTG3Q14201 252 aaPredicted RBP20.16■□□□□ 0.82
CLN3-259ENST00000637551 GPBP1Q86WP2 473 aa20.16■□□□□ 0.82
CLN3-259ENST00000637551 BSNDQ8WZ55 320 aa20.16■□□□□ 0.82
CLN3-259ENST00000637551 P2RX5Q93086 422 aa20.16■□□□□ 0.82
CLN3-259ENST00000637551 GAS2L1Q99501 681 aaPredicted RBP20.16■□□□□ 0.82
CLN3-259ENST00000637551 SEL1LQ9UBV2 794 aa20.16■□□□□ 0.82
CLN3-259ENST00000637551 LCHNA4D1U4 455 aa20.15■□□□□ 0.82
CLN3-259ENST00000637551 N4BP3O15049 544 aa20.15■□□□□ 0.82
CLN3-259ENST00000637551 CSDE1O75534 798 aaKnown RBP20.15■□□□□ 0.82
CLN3-259ENST00000637551 MAPTP10636 758 aaKnown RBP20.15■□□□□ 0.82
CLN3-259ENST00000637551 ATF7P17544 494 aaPredicted RBP20.15■□□□□ 0.82
CLN3-259ENST00000637551 ARF4P18085 180 aaPredicted RBP20.15■□□□□ 0.82
CLN3-259ENST00000637551 NCLP19338 710 aaKnown RBP20.15■□□□□ 0.82
CLN3-259ENST00000637551 ANP32AP39687 249 aaKnown RBP20.15■□□□□ 0.82
CLN3-259ENST00000637551 ME1P48163 572 aa20.15■□□□□ 0.82
CLN3-259ENST00000637551 ARSHQ5FYA8 562 aa20.15■□□□□ 0.82
CLN3-259ENST00000637551 CNNM4Q6P4Q7 775 aa20.15■□□□□ 0.82
CLN3-259ENST00000637551 SLC27A1Q6PCB7 646 aa20.15■□□□□ 0.82
CLN3-259ENST00000637551 USP49Q70CQ1 688 aa20.15■□□□□ 0.82
CLN3-259ENST00000637551 SV2BQ7L1I2 683 aa20.15■□□□□ 0.82
CLN3-259ENST00000637551 TMCO2Q7Z6W1 182 aaPredicted RBP20.15■□□□□ 0.82
CLN3-259ENST00000637551 ABI1Q8IZP0 508 aa20.15■□□□□ 0.82
CLN3-259ENST00000637551 LRRC43Q8N309 656 aa20.15■□□□□ 0.82
CLN3-259ENST00000637551 IQUBQ8NA54 791 aa20.15■□□□□ 0.82
CLN3-259ENST00000637551 TNMDQ9H2S6 317 aa20.15■□□□□ 0.82
CLN3-259ENST00000637551 PARVGQ9HBI0 331 aa20.15■□□□□ 0.82
CLN3-259ENST00000637551 KIAA1671Q9BY89 1806 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 COL4A4P53420 1690 aaPredicted RBP20.14■□□□□ 0.81
CLN3-259ENST00000637551 SSBP05455 408 aaKnown RBP eCLIP20.14■□□□□ 0.81
CLN3-259ENST00000637551 PRKCBP05771 671 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 LINC00271P0C7V0 271 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 FGFR4P22455 802 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 STAT6P42226 847 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 RESP18Q5W5W9 173 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 ADALQ6DHV7 355 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 FAM117BQ6P1L5 589 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 MAEAQ7L5Y9 396 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 LEO1Q8WVC0 666 aaPredicted RBP20.14■□□□□ 0.81
CLN3-259ENST00000637551 SPATA32Q96LK8 384 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 REEP2Q9BRK0 252 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 C11orf84Q9BUA3 381 aaPredicted RBP20.14■□□□□ 0.81
CLN3-259ENST00000637551 LMAN2LQ9H0V9 348 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 ST6GALNAC4Q9H4F1 302 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 KMT5AQ9NQR1 393 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 AAASQ9NRG9 546 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 FAM13BQ9NYF5 915 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 THEGQ9P2T0 379 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 USP25Q9UHP3 1055 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 PCDHA7Q9UN72 937 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 PCDHB2Q9Y5E7 798 aa20.14■□□□□ 0.81
CLN3-259ENST00000637551 K7ERI5 159 aa20.13■□□□□ 0.81
CLN3-259ENST00000637551 TBCAO75347 108 aaKnown RBP20.13■□□□□ 0.81
CLN3-259ENST00000637551 NCKAP1LP55160 1127 aa20.13■□□□□ 0.81
CLN3-259ENST00000637551 PEX3P56589 373 aa20.13■□□□□ 0.81
CLN3-259ENST00000637551 AMPD3Q01432 767 aa20.13■□□□□ 0.81
CLN3-259ENST00000637551 PRPF4BQ13523 1007 aaKnown RBP20.13■□□□□ 0.81
CLN3-259ENST00000637551 E2F4Q16254 413 aa20.13■□□□□ 0.81
CLN3-259ENST00000637551 DCAF4L1Q3SXM0 396 aa20.13■□□□□ 0.81
CLN3-259ENST00000637551 UBXN11Q5T124 520 aa20.13■□□□□ 0.81
CLN3-259ENST00000637551 FOXD4L5Q5VV16 416 aaPredicted RBP20.13■□□□□ 0.81
CLN3-259ENST00000637551 SHC4Q6S5L8 630 aa20.13■□□□□ 0.81
CLN3-259ENST00000637551 GLB1LQ6UWU2 654 aa20.13■□□□□ 0.81
CLN3-259ENST00000637551 LRRC15Q8TF66 581 aa20.13■□□□□ 0.81
CLN3-259ENST00000637551 FOXD4L4Q8WXT5 416 aaPredicted RBP20.13■□□□□ 0.81
CLN3-259ENST00000637551 UHRF1Q96T88 793 aaPredicted RBP20.13■□□□□ 0.81
CLN3-259ENST00000637551 ADPGKQ9BRR6 497 aa20.13■□□□□ 0.81
CLN3-259ENST00000637551 KANSL3Q9P2N6 904 aa20.13■□□□□ 0.81
CLN3-259ENST00000637551 FAM237AA0A1B0GTK4 181 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms