RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CLRN2A0PK11 232 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 PPIP5K2O43314 1243 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 PAEPP09466 180 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 HSPA1LP34931 641 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 RARRES1P49788 294 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 EIF3BP55884 814 aaKnown RBP13.79□□□□□ -0.2
LINC00540-203ENST00000631321 GTF2BQ00403 316 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 MICALCLQ6ZW33 695 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 XXYLT1Q8NBI6 393 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 RDH13Q8NBN7 331 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 FMO2Q99518 471 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 TIPINQ9BVW5 301 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 DPH5Q9H2P9 285 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 SEPT11Q9NVA2 429 aaKnown RBP13.79□□□□□ -0.2
LINC00540-203ENST00000631321 UBIAD1Q9Y5Z9 338 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 SYNGAP1Q96PV0 1343 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 FTLP02792 175 aaPredicted RBP13.79□□□□□ -0.2
LINC00540-203ENST00000631321 CAP2P40123 477 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 GPC5P78333 572 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 GRIPAP1Q4V328 841 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 MORC4Q8TE76 937 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 CLEC4DQ8WXI8 215 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 CBWD1Q9BRT8 395 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 AGO4Q9HCK5 861 aaKnown RBP13.79□□□□□ -0.2
LINC00540-203ENST00000631321 ERVK-5Q9HDB9 667 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 HSPBP1Q9NZL4 362 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 COL20A1Q9P218 1284 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 TISP43B9A030 160 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 MEFVO15553 781 aaPredicted RBP13.78□□□□□ -0.2
LINC00540-203ENST00000631321 RTN2O75298 545 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 GGPS1O95749 300 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 GZMAP12544 262 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 INPP5BP32019 993 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 HPDP32754 393 aaPredicted RBP13.78□□□□□ -0.2
LINC00540-203ENST00000631321 PPP2R2AP63151 447 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 PRPF4BQ13523 1007 aaKnown RBP13.78□□□□□ -0.2
LINC00540-203ENST00000631321 TNIP1Q15025 636 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 DLGAP5Q15398 846 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 FAM71AQ8IYT1 594 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 RPUSD2Q8IZ73 545 aaKnown RBP13.78□□□□□ -0.2
LINC00540-203ENST00000631321 UBL4BQ8N7F7 174 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 PLEKHO2Q8TD55 490 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 ZSWIM1Q9BR11 485 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 PCIF1Q9H4Z3 704 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 NOCTQ9UK39 431 aaKnown RBP13.78□□□□□ -0.2
LINC00540-203ENST00000631321 DDX39AO00148 427 aaKnown RBP13.78□□□□□ -0.2
LINC00540-203ENST00000631321 PHF2O75151 1096 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 ERLIN2O94905 339 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 NUDT17P0C025 328 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 PTGIRP43119 386 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 QARSP47897 775 aaKnown RBP13.78□□□□□ -0.2
LINC00540-203ENST00000631321 GCLMP48507 274 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 SEC24CP53992 1094 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 MAP3K10Q02779 954 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 ZNF211Q13398 564 aaPredicted RBP13.78□□□□□ -0.2
LINC00540-203ENST00000631321 TKFCQ3LXA3 575 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 JAMLQ86YT9 394 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 IL31RAQ8NI17 732 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 TLCD1Q96CP7 247 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 AGBL1Q96MI9 1066 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 EPB41L4BQ9H329 900 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 CTTNBP2NLQ9P2B4 639 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 PCYOX1Q9UHG3 505 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 CCPG1Q9ULG6 757 aa13.78□□□□□ -0.2
LINC00540-203ENST00000631321 KIAA0391O15091 583 aaKnown RBP13.77□□□□□ -0.21
LINC00540-203ENST00000631321 TRAPPC3O43617 180 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 APBA3O96018 575 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 CHRNB2P17787 502 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 CTNNA2P26232 953 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 CHRNA3P32297 505 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 LIG3P49916 1009 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 PEX5P50542 639 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 ZYXQ15942 572 aaKnown RBP13.77□□□□□ -0.21
LINC00540-203ENST00000631321 PCNX4Q63HM2 1172 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 MICALL1Q8N3F8 863 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 SLC17A8Q8NDX2 589 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 EPS8L1Q8TE68 723 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 CD101Q93033 1021 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 IWS1Q96ST2 819 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 PCDHB18PQ96TA0 734 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 GLIS2Q9BZE0 524 aaPredicted RBP13.77□□□□□ -0.21
LINC00540-203ENST00000631321 TMEM117Q9H0C3 514 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 CENPHQ9H3R5 247 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 TMOD4Q9NZQ9 345 aa13.77□□□□□ -0.21
LINC00540-203ENST00000631321 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.77□□□□□ -0.21
LINC00540-203ENST00000631321 KIAA0754O94854 1291 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 ALAS1P13196 640 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 GBP1P32455 592 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 MXI1P50539 228 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 NCKAP1LP55160 1127 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 ZDHHC24Q6UX98 284 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 HAUS6Q7Z4H7 955 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 MCF2L2Q86YR7 1114 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 PRELID2Q8N945 189 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 KRT35Q92764 455 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 GLG1Q92896 1179 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 CNOT8Q9UFF9 292 aaKnown RBP13.76□□□□□ -0.21
LINC00540-203ENST00000631321 PGAP2Q9UHJ9 254 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 RASAL2Q9UJF2 1139 aa13.76□□□□□ -0.21
LINC00540-203ENST00000631321 PSME4Q14997 1843 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms