RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 LIG1P18858 919 aa19.96■□□□□ 0.79
CLN3-239ENST00000628023 NCBP1Q09161 790 aaKnown RBP19.96■□□□□ 0.79
CLN3-239ENST00000628023 MAPK7Q13164 816 aa19.96■□□□□ 0.79
CLN3-239ENST00000628023 ARSHQ5FYA8 562 aa19.96■□□□□ 0.79
CLN3-239ENST00000628023 FAM43BQ6ZT52 329 aaPredicted RBP19.96■□□□□ 0.79
CLN3-239ENST00000628023 DAW1Q8N136 415 aa19.96■□□□□ 0.79
CLN3-239ENST00000628023 FSIP1Q8NA03 581 aa19.96■□□□□ 0.79
CLN3-239ENST00000628023 FBXO22Q8NEZ5 403 aa19.96■□□□□ 0.79
CLN3-239ENST00000628023 LINC01599Q8WXQ3 324 aa19.96■□□□□ 0.79
CLN3-239ENST00000628023 SAMD11Q96NU1 681 aa19.96■□□□□ 0.79
CLN3-239ENST00000628023 KIFC3Q9BVG8 833 aa19.96■□□□□ 0.79
CLN3-239ENST00000628023 NFKBIZQ9BYH8 718 aa19.96■□□□□ 0.79
CLN3-239ENST00000628023 MINDY3Q9H8M7 445 aa19.96■□□□□ 0.79
CLN3-239ENST00000628023 A0A1B0GVL5 298 aa19.95■□□□□ 0.78
CLN3-239ENST00000628023 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.95■□□□□ 0.78
CLN3-239ENST00000628023 SFI1A8K8P3 1242 aa19.95■□□□□ 0.78
CLN3-239ENST00000628023 ENPP3O14638 875 aa19.95■□□□□ 0.78
CLN3-239ENST00000628023 PLS3P13797 630 aa19.95■□□□□ 0.78
CLN3-239ENST00000628023 PFKFB1P16118 471 aa19.95■□□□□ 0.78
CLN3-239ENST00000628023 KCNQ1P51787 676 aa19.95■□□□□ 0.78
CLN3-239ENST00000628023 HTRA4P83105 476 aaPredicted RBP19.95■□□□□ 0.78
CLN3-239ENST00000628023 MBTD1Q05BQ5 628 aa19.95■□□□□ 0.78
CLN3-239ENST00000628023 PCBP1Q15365 356 aaKnown RBP eCLIP19.95■□□□□ 0.78
CLN3-239ENST00000628023 TMEM132AQ24JP5 1023 aa19.95■□□□□ 0.78
CLN3-239ENST00000628023 CDCA2Q69YH5 1023 aaPredicted RBP19.95■□□□□ 0.78
CLN3-239ENST00000628023 DYMQ7RTS9 669 aa19.95■□□□□ 0.78
CLN3-239ENST00000628023 IFNLR1Q8IU57 520 aaPredicted RBP19.95■□□□□ 0.78
CLN3-239ENST00000628023 MRPS27Q92552 414 aaKnown RBP19.95■□□□□ 0.78
CLN3-239ENST00000628023 LRRC27Q9C0I9 530 aa19.95■□□□□ 0.78
CLN3-239ENST00000628023 C17orf75Q9HAS0 396 aa19.95■□□□□ 0.78
CLN3-239ENST00000628023 KMT5AQ9NQR1 393 aa19.95■□□□□ 0.78
CLN3-239ENST00000628023 C1orf112Q9NSG2 853 aa19.95■□□□□ 0.78
CLN3-239ENST00000628023 DACT1Q9NYF0 836 aa19.95■□□□□ 0.78
CLN3-239ENST00000628023 LARSQ9P2J5 1176 aaKnown RBP19.95■□□□□ 0.78
CLN3-239ENST00000628023 TCF20Q9UGU0 1960 aaKnown RBP19.94■□□□□ 0.78
CLN3-239ENST00000628023 A0A1W2PQ27 194 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 A0A1W2PQ64 194 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 A0A1W2PQD8 194 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 MGEA5O60502 916 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 NPTX2P47972 431 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 EFNA5P52803 228 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 SMTNP53814 917 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 E2F4Q16254 413 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 MAPK6Q16659 721 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 TWF2Q6IBS0 349 aaKnown RBP19.94■□□□□ 0.78
CLN3-239ENST00000628023 CEP57L1Q8IYX8 460 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 MYCT1Q8N699 235 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 TOP1MTQ969P6 601 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 TNMDQ9H2S6 317 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 MAGEF1Q9HAY2 307 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 PARVGQ9HBI0 331 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 CHST12Q9NRB3 414 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 AGPAT5Q9NUQ2 364 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 PRMT7Q9NVM4 692 aaPredicted RBP19.94■□□□□ 0.78
CLN3-239ENST00000628023 KCNG1Q9UIX4 513 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 LRFN2Q9ULH4 789 aa19.94■□□□□ 0.78
CLN3-239ENST00000628023 BDP1A6H8Y1 2624 aa19.93■□□□□ 0.78
CLN3-239ENST00000628023 MYMKA6NI61 221 aa19.93■□□□□ 0.78
CLN3-239ENST00000628023 SARSP49591 514 aaKnown RBP19.93■□□□□ 0.78
CLN3-239ENST00000628023 AMPD3Q01432 767 aa19.93■□□□□ 0.78
CLN3-239ENST00000628023 GIT2Q14161 759 aa19.93■□□□□ 0.78
CLN3-239ENST00000628023 PTPROQ16827 1216 aa19.93■□□□□ 0.78
CLN3-239ENST00000628023 SLC24A5Q71RS6 500 aa19.93■□□□□ 0.78
CLN3-239ENST00000628023 SP7Q8TDD2 431 aaPredicted RBP19.93■□□□□ 0.78
CLN3-239ENST00000628023 DDX12PQ92771 950 aa19.93■□□□□ 0.78
CLN3-239ENST00000628023 STAMQ92783 540 aa19.93■□□□□ 0.78
CLN3-239ENST00000628023 RGS18Q9NS28 235 aa19.93■□□□□ 0.78
CLN3-239ENST00000628023 RNF216Q9NWF9 866 aaPredicted RBP19.93■□□□□ 0.78
CLN3-239ENST00000628023 REV3LO60673 3130 aa19.92■□□□□ 0.78
CLN3-239ENST00000628023 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.92■□□□□ 0.78
CLN3-239ENST00000628023 SLC16A4O15374 487 aa19.92■□□□□ 0.78
CLN3-239ENST00000628023 TSPAN1O60635 241 aa19.92■□□□□ 0.78
CLN3-239ENST00000628023 PRKCBP05771 671 aa19.92■□□□□ 0.78
CLN3-239ENST00000628023 STAG3L1P0CL83 205 aa19.92■□□□□ 0.78
CLN3-239ENST00000628023 SYKP43405 635 aa19.92■□□□□ 0.78
CLN3-239ENST00000628023 DSC3Q14574 896 aa19.92■□□□□ 0.78
CLN3-239ENST00000628023 NOTUMQ6P988 496 aa19.92■□□□□ 0.78
CLN3-239ENST00000628023 RTN4RL1Q86UN2 441 aaPredicted RBP19.92■□□□□ 0.78
CLN3-239ENST00000628023 C17orf80Q9BSJ5 609 aa19.92■□□□□ 0.78
CLN3-239ENST00000628023 PCDHB7Q9Y5E2 793 aa19.92■□□□□ 0.78
CLN3-239ENST00000628023 PHLPP2Q6ZVD8 1323 aa19.92■□□□□ 0.78
CLN3-239ENST00000628023 ADGRA3Q8IWK6 1321 aa19.92■□□□□ 0.78
CLN3-239ENST00000628023 MYH11P35749 1972 aa19.92■□□□□ 0.78
CLN3-239ENST00000628023 COL4A4P53420 1690 aaPredicted RBP19.91■□□□□ 0.78
CLN3-239ENST00000628023 H0YCG3 227 aa19.91■□□□□ 0.78
CLN3-239ENST00000628023 K7ENM7 598 aa19.91■□□□□ 0.78
CLN3-239ENST00000628023 IDEP14735 1019 aa19.91■□□□□ 0.78
CLN3-239ENST00000628023 AXLP30530 894 aa19.91■□□□□ 0.78
CLN3-239ENST00000628023 NDUFA8P51970 172 aa19.91■□□□□ 0.78
CLN3-239ENST00000628023 PRPF4BQ13523 1007 aaKnown RBP19.91■□□□□ 0.78
CLN3-239ENST00000628023 NPAS4Q8IUM7 802 aa19.91■□□□□ 0.78
CLN3-239ENST00000628023 RNF169Q8NCN4 708 aa19.91■□□□□ 0.78
CLN3-239ENST00000628023 SPIRE2Q8WWL2 714 aa19.91■□□□□ 0.78
CLN3-239ENST00000628023 CPB2Q96IY4 423 aa19.91■□□□□ 0.78
CLN3-239ENST00000628023 PRIMPOLQ96LW4 560 aa19.91■□□□□ 0.78
CLN3-239ENST00000628023 NECAB3Q96P71 396 aaPredicted RBP19.91■□□□□ 0.78
CLN3-239ENST00000628023 USP25Q9UHP3 1055 aa19.91■□□□□ 0.78
CLN3-239ENST00000628023 K7ERI5 159 aa19.9■□□□□ 0.78
CLN3-239ENST00000628023 B4GALT5O43286 388 aa19.9■□□□□ 0.78
CLN3-239ENST00000628023 ZNF131P52739 623 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms