RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 LRRC43Q8N309 656 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 POF1BQ8WVV4 589 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 TMEM143Q96AN5 459 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 MTRQ99707 1265 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 MRPL9Q9BYD2 267 aaKnown RBP14.02□□□□□ -0.17
PNKP-217ENST00000625216 CWH43Q9H720 699 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 TUFT1Q9NNX1 390 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 DDX19AQ9NUU7 478 aaKnown RBP14.02□□□□□ -0.17
PNKP-217ENST00000625216 RNF19AQ9NV58 838 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 PUF60Q9UHX1 559 aaKnown RBP14.02□□□□□ -0.17
PNKP-217ENST00000625216 FAM50BQ9Y247 325 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 LZTS1Q9Y250 596 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 COL4A4P53420 1690 aaPredicted RBP14.01□□□□□ -0.17
PNKP-217ENST00000625216 FGF18O76093 207 aa14.01□□□□□ -0.17
PNKP-217ENST00000625216 SRGAP2CP0DJJ0 459 aa14.01□□□□□ -0.17
PNKP-217ENST00000625216 MUTP22033 750 aa14.01□□□□□ -0.17
PNKP-217ENST00000625216 PPM1AP35813 382 aa14.01□□□□□ -0.17
PNKP-217ENST00000625216 PLCB3Q01970 1234 aa14.01□□□□□ -0.17
PNKP-217ENST00000625216 NCBP1Q09161 790 aaKnown RBP14.01□□□□□ -0.17
PNKP-217ENST00000625216 TFDP1Q14186 410 aa14.01□□□□□ -0.17
PNKP-217ENST00000625216 CCDC183Q5T5S1 534 aa14.01□□□□□ -0.17
PNKP-217ENST00000625216 TWF2Q6IBS0 349 aaKnown RBP14.01□□□□□ -0.17
PNKP-217ENST00000625216 THNSL1Q8IYQ7 743 aa14.01□□□□□ -0.17
PNKP-217ENST00000625216 COLGALT1Q8NBJ5 622 aa14.01□□□□□ -0.17
PNKP-217ENST00000625216 RNF169Q8NCN4 708 aa14.01□□□□□ -0.17
PNKP-217ENST00000625216 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.01□□□□□ -0.17
PNKP-217ENST00000625216 ERMNQ8TAM6 284 aa14.01□□□□□ -0.17
PNKP-217ENST00000625216 CCDC43Q96MW1 224 aaKnown RBP14.01□□□□□ -0.17
PNKP-217ENST00000625216 NACC1Q96RE7 527 aa14.01□□□□□ -0.17
PNKP-217ENST00000625216 POLR3CQ9BUI4 534 aaPredicted RBP14.01□□□□□ -0.17
PNKP-217ENST00000625216 CLSTN2Q9H4D0 955 aa14.01□□□□□ -0.17
PNKP-217ENST00000625216 PIN4Q9Y237 131 aaKnown RBP14.01□□□□□ -0.17
PNKP-217ENST00000625216 WDR81Q562E7 1941 aa14.01□□□□□ -0.17
PNKP-217ENST00000625216 MUC3AQ02505 3323 aa14.01□□□□□ -0.17
PNKP-217ENST00000625216 NCOR1O75376 2440 aa14□□□□□ -0.17
PNKP-217ENST00000625216 RALGAPA2Q2PPJ7 1873 aa14□□□□□ -0.17
PNKP-217ENST00000625216 A0A087X0B3 334 aa14□□□□□ -0.17
PNKP-217ENST00000625216 FSD2A1L4K1 749 aa14□□□□□ -0.17
PNKP-217ENST00000625216 PP2D1A8MPX8 630 aa14□□□□□ -0.17
PNKP-217ENST00000625216 SPATA31C1P0DKV0 1188 aa14□□□□□ -0.17
PNKP-217ENST00000625216 DNAJB1P25685 340 aa14□□□□□ -0.17
PNKP-217ENST00000625216 AXLP30530 894 aa14□□□□□ -0.17
PNKP-217ENST00000625216 LONP1P36776 959 aaKnown RBP14□□□□□ -0.17
PNKP-217ENST00000625216 TECP42680 631 aa14□□□□□ -0.17
PNKP-217ENST00000625216 RARRES1P49788 294 aa14□□□□□ -0.17
PNKP-217ENST00000625216 KRT17Q04695 432 aa14□□□□□ -0.17
PNKP-217ENST00000625216 HYAL1Q12794 435 aa14□□□□□ -0.17
PNKP-217ENST00000625216 ZSCAN23Q3MJ62 389 aa14□□□□□ -0.17
PNKP-217ENST00000625216 KCNT2Q6UVM3 1135 aa14□□□□□ -0.17
PNKP-217ENST00000625216 DTHD1Q6ZMT9 781 aa14□□□□□ -0.17
PNKP-217ENST00000625216 LRRC55Q6ZSA7 311 aa14□□□□□ -0.17
PNKP-217ENST00000625216 CATSPER3Q86XQ3 398 aa14□□□□□ -0.17
PNKP-217ENST00000625216 IFNLR1Q8IU57 520 aaPredicted RBP14□□□□□ -0.17
PNKP-217ENST00000625216 RNF149Q8NC42 400 aa14□□□□□ -0.17
PNKP-217ENST00000625216 MICAL1Q8TDZ2 1067 aa14□□□□□ -0.17
PNKP-217ENST00000625216 SYAP1Q96A49 352 aaPredicted RBP14□□□□□ -0.17
PNKP-217ENST00000625216 PGBD4Q96DM1 585 aa14□□□□□ -0.17
PNKP-217ENST00000625216 EPSTI1Q96J88 318 aa14□□□□□ -0.17
PNKP-217ENST00000625216 ZNF558Q96NG5 402 aa14□□□□□ -0.17
PNKP-217ENST00000625216 NUP62CLQ9H1M0 184 aa14□□□□□ -0.17
PNKP-217ENST00000625216 XPNPEP1Q9NQW7 623 aa14□□□□□ -0.17
PNKP-217ENST00000625216 AGPAT5Q9NUQ2 364 aa14□□□□□ -0.17
PNKP-217ENST00000625216 FAM105AQ9NUU6 356 aa14□□□□□ -0.17
PNKP-217ENST00000625216 CLDND1Q9NY35 253 aa14□□□□□ -0.17
PNKP-217ENST00000625216 DBR1Q9UK59 544 aaKnown RBP14□□□□□ -0.17
PNKP-217ENST00000625216 STK24Q9Y6E0 443 aa14□□□□□ -0.17
PNKP-217ENST00000625216 GRXCR2A6NFK2 248 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 POTEMA6NI47 508 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 ATF7P17544 494 aaPredicted RBP13.99□□□□□ -0.17
PNKP-217ENST00000625216 RPA1P27694 616 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 ARL2P36404 184 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 PTENP60484 403 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 ADAM15Q13444 863 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 PDIA5Q14554 519 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 CLLU1OSQ5K130 101 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 PTCRAQ6ISU1 281 aaPredicted RBP13.99□□□□□ -0.17
PNKP-217ENST00000625216 GLB1LQ6UWU2 654 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 EP400NLQ6ZTU2 488 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 CNNM3Q8NE01 707 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 PIGOQ8TEQ8 1089 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 NFKBIZQ9BYH8 718 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 TLR9Q9NR96 1032 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 FAM13BQ9NYF5 915 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 SPG21Q9NZD8 308 aa13.99□□□□□ -0.17
PNKP-217ENST00000625216 H3BQ06 376 aaPredicted RBP13.98□□□□□ -0.17
PNKP-217ENST00000625216 ZNF202O95125 648 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 HOXA11P31270 313 aaPredicted RBP13.98□□□□□ -0.17
PNKP-217ENST00000625216 IRS1P35568 1242 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 LTBRP36941 435 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 SYKP43405 635 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 ALDH7A1P49419 539 aaKnown RBP13.98□□□□□ -0.17
PNKP-217ENST00000625216 FXR2P51116 673 aaKnown RBP eCLIP13.98□□□□□ -0.17
PNKP-217ENST00000625216 HAUS3Q68CZ6 603 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 MRPL10Q7Z7H8 261 aaKnown RBP13.98□□□□□ -0.17
PNKP-217ENST00000625216 EFHBQ8N7U6 833 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 IGSF22Q8N9C0 903 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 MCPH1Q8NEM0 835 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 HELQQ8TDG4 1101 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 CCDC51Q96ER9 411 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 NECAB3Q96P71 396 aaPredicted RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms