RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 RIOK1Q9BRS2 568 aaKnown RBP11.64□□□□□ -0.55
UPF3A-212ENST00000619079 CD209Q9NNX6 404 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 NENFQ9UMX5 172 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 ATAD5Q96QE3 1844 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 TMEM120BA0PK00 339 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 RIPK2O43353 540 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 PEX11AO75192 247 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 RAD17O75943 681 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 EYA4O95677 639 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 SP100P23497 879 aaPredicted RBP11.64□□□□□ -0.55
UPF3A-212ENST00000619079 GRB10Q13322 594 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 LETM2Q2VYF4 491 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 PPP1R15BQ5SWA1 713 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 CHADLQ6NUI6 762 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 TRMT10CQ7L0Y3 403 aaKnown RBP11.64□□□□□ -0.55
UPF3A-212ENST00000619079 HEATR3Q7Z4Q2 680 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 EXOC3L1Q86VI1 746 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 RBBP8NLQ8NC74 664 aaPredicted RBP11.64□□□□□ -0.55
UPF3A-212ENST00000619079 RAD54LQ92698 747 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 KIFAP3Q92845 792 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 SERPINB12Q96P63 405 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 NUDCD1Q96RS6 583 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 ZNRF3Q9ULT6 936 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 JAG2Q9Y219 1238 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 PITPNM2Q9BZ72 1349 aa11.63□□□□□ -0.55
UPF3A-212ENST00000619079 SPDYE5A6NIY4 337 aa11.63□□□□□ -0.55
UPF3A-212ENST00000619079 PDHA1P08559 390 aa11.63□□□□□ -0.55
UPF3A-212ENST00000619079 MUM1Q2TAK8 710 aa11.63□□□□□ -0.55
UPF3A-212ENST00000619079 LRRC23Q53EV4 343 aaPredicted RBP11.63□□□□□ -0.55
UPF3A-212ENST00000619079 PPP4R3CPQ6ZMV5 832 aa11.63□□□□□ -0.55
UPF3A-212ENST00000619079 ARHGEF18Q6ZSZ5 1173 aa11.63□□□□□ -0.55
UPF3A-212ENST00000619079 C15orf52Q6ZUT6 534 aaKnown RBP11.63□□□□□ -0.55
UPF3A-212ENST00000619079 PODNQ7Z5L7 613 aa11.63□□□□□ -0.55
UPF3A-212ENST00000619079 ARHGEF2Q92974 986 aaKnown RBP11.63□□□□□ -0.55
UPF3A-212ENST00000619079 EPAS1Q99814 870 aa11.63□□□□□ -0.55
UPF3A-212ENST00000619079 SYT15Q9BQS2 421 aa11.63□□□□□ -0.55
UPF3A-212ENST00000619079 FAM192AQ9GZU8 254 aa11.63□□□□□ -0.55
UPF3A-212ENST00000619079 SEMA4AQ9H3S1 761 aa11.63□□□□□ -0.55
UPF3A-212ENST00000619079 CHCHD3Q9NX63 227 aaKnown RBP11.63□□□□□ -0.55
UPF3A-212ENST00000619079 LRCH1Q9Y2L9 728 aa11.63□□□□□ -0.55
UPF3A-212ENST00000619079 SNX24Q9Y343 169 aa11.63□□□□□ -0.55
UPF3A-212ENST00000619079 MROH7Q68CQ1 1323 aa11.63□□□□□ -0.55
UPF3A-212ENST00000619079 TTC36A6NLP5 189 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 PHF2O75151 1096 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 FXR2P51116 673 aaKnown RBP eCLIP11.62□□□□□ -0.55
UPF3A-212ENST00000619079 PRPF4BQ13523 1007 aaKnown RBP11.62□□□□□ -0.55
UPF3A-212ENST00000619079 MTFR1Q15390 333 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 FAM26FQ5R3K3 315 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 ADGRA1Q86SQ6 560 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 VSIG1Q86XK7 387 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 DDX12PQ92771 950 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 MAGEB18Q96M61 343 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 FGD4Q96M96 766 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 TGS1Q96RS0 853 aaKnown RBP11.62□□□□□ -0.55
UPF3A-212ENST00000619079 GRHL1Q9NZI5 618 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 STOML1Q9UBI4 398 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 NKX1-2Q9UD57 310 aaPredicted RBP11.62□□□□□ -0.55
UPF3A-212ENST00000619079 GJA3Q9Y6H8 435 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 LTBP1Q14766 1721 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 NCANO14594 1321 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 SYNGAP1Q96PV0 1343 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 CYP2D7A0A087X1C5 515 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 TSPY2A6NKD2 308 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 SKIP12755 728 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 UCHL3P15374 230 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 GNA11P29992 359 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 SLCO1A2P46721 670 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 SH3BGRP55822 239 aaPredicted RBP11.62□□□□□ -0.55
UPF3A-212ENST00000619079 GTF2IP78347 998 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 GRM4Q14833 912 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 LRRC14Q15048 493 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 PTPROQ16827 1216 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 SPDYAQ5MJ70 313 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 FBXO33Q7Z6M2 555 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 DGKHQ86XP1 1220 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 KLHL23Q8NBE8 558 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 RFFLQ8WZ73 363 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 UTP4Q969X6 686 aaKnown RBP11.62□□□□□ -0.55
UPF3A-212ENST00000619079 RBM41Q96IZ5 413 aaKnown RBP11.62□□□□□ -0.55
UPF3A-212ENST00000619079 RMDN2Q96LZ7 410 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 RPS6KC1Q96S38 1066 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 LZTS2Q9BRK4 669 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 DCLRE1BQ9H816 532 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 BMP2KQ9NSY1 1161 aaPredicted RBP11.62□□□□□ -0.55
UPF3A-212ENST00000619079 PCYOX1Q9UHG3 505 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 TRIM33Q9UPN9 1127 aa11.62□□□□□ -0.55
UPF3A-212ENST00000619079 BAZ2BQ9UIF8 2168 aaKnown RBP11.62□□□□□ -0.55
UPF3A-212ENST00000619079 DDX3YO15523 660 aaKnown RBP11.61□□□□□ -0.55
UPF3A-212ENST00000619079 NMT2O60551 498 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 KRT13P13646 458 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 STX2P32856 288 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 PTDSS1P48651 473 aaKnown RBP11.61□□□□□ -0.55
UPF3A-212ENST00000619079 STRN3Q13033 797 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 LRRC41Q15345 812 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 EDRF1Q3B7T1 1238 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 DPY19L2Q6NUT2 758 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 PPP1R21Q6ZMI0 780 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 MGARPQ8TDB4 240 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 SPZ1Q9BXG8 430 aa11.61□□□□□ -0.55
UPF3A-212ENST00000619079 C6orf50Q9HD87 102 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms