RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 PCDHB2Q9Y5E7 798 aa21.16■□□□□ 0.98
CDX1-202ENST00000616154 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.15■□□□□ 0.98
CDX1-202ENST00000616154 GAS2O43903 313 aaKnown RBP21.15■□□□□ 0.98
CDX1-202ENST00000616154 YWHABP31946 246 aaKnown RBP21.15■□□□□ 0.98
CDX1-202ENST00000616154 CA8P35219 290 aa21.15■□□□□ 0.98
CDX1-202ENST00000616154 MRE11P49959 708 aa21.15■□□□□ 0.98
CDX1-202ENST00000616154 RNASELQ05823 741 aaKnown RBP21.15■□□□□ 0.98
CDX1-202ENST00000616154 MRPL10Q7Z7H8 261 aaKnown RBP21.15■□□□□ 0.98
CDX1-202ENST00000616154 POTEDQ86YR6 584 aa21.15■□□□□ 0.98
CDX1-202ENST00000616154 BCL7CQ8WUZ0 217 aaPredicted RBP21.15■□□□□ 0.98
CDX1-202ENST00000616154 TMEM143Q96AN5 459 aa21.15■□□□□ 0.98
CDX1-202ENST00000616154 ASIC4Q96FT7 647 aa21.15■□□□□ 0.98
CDX1-202ENST00000616154 DENND4AQ7Z401 1863 aa21.14■□□□□ 0.97
CDX1-202ENST00000616154 MTHFRP42898 656 aa21.14■□□□□ 0.97
CDX1-202ENST00000616154 SPIRE1Q08AE8 756 aa21.14■□□□□ 0.97
CDX1-202ENST00000616154 LAMTOR4Q0VGL1 99 aa21.14■□□□□ 0.97
CDX1-202ENST00000616154 EMC2Q15006 297 aa21.14■□□□□ 0.97
CDX1-202ENST00000616154 AGMOQ6ZNB7 445 aa21.14■□□□□ 0.97
CDX1-202ENST00000616154 DIS3L2Q8IYB7 885 aaKnown RBP21.14■□□□□ 0.97
CDX1-202ENST00000616154 PRSS33Q8NF86 280 aa21.14■□□□□ 0.97
CDX1-202ENST00000616154 URGCPQ8TCY9 931 aa21.14■□□□□ 0.97
CDX1-202ENST00000616154 TCP11Q8WWU5 503 aa21.14■□□□□ 0.97
CDX1-202ENST00000616154 AUTS2Q8WXX7 1259 aa21.14■□□□□ 0.97
CDX1-202ENST00000616154 PRRX2Q99811 253 aa21.14■□□□□ 0.97
CDX1-202ENST00000616154 POMKQ9H5K3 350 aa21.14■□□□□ 0.97
CDX1-202ENST00000616154 MINDY3Q9H8M7 445 aa21.14■□□□□ 0.97
CDX1-202ENST00000616154 DNAJB4Q9UDY4 337 aa21.14■□□□□ 0.97
CDX1-202ENST00000616154 CNTNAP2Q9UHC6 1331 aa21.14■□□□□ 0.97
CDX1-202ENST00000616154 FAM205CA6NFA0 338 aa21.13■□□□□ 0.97
CDX1-202ENST00000616154 ASAP2O43150 1006 aa21.13■□□□□ 0.97
CDX1-202ENST00000616154 MARCH6O60337 910 aa21.13■□□□□ 0.97
CDX1-202ENST00000616154 B4GALT3O60512 393 aa21.13■□□□□ 0.97
CDX1-202ENST00000616154 SRGAP2CP0DJJ0 459 aa21.13■□□□□ 0.97
CDX1-202ENST00000616154 SP100P23497 879 aaPredicted RBP21.13■□□□□ 0.97
CDX1-202ENST00000616154 SLC11A1P49279 550 aa21.13■□□□□ 0.97
CDX1-202ENST00000616154 RABEP1Q15276 862 aa21.13■□□□□ 0.97
CDX1-202ENST00000616154 NCAPH2Q6IBW4 605 aa21.13■□□□□ 0.97
CDX1-202ENST00000616154 OTUD6AQ7L8S5 288 aa21.13■□□□□ 0.97
CDX1-202ENST00000616154 SLFN12Q8IYM2 578 aa21.13■□□□□ 0.97
CDX1-202ENST00000616154 RIPOR3Q96MK2 946 aa21.13■□□□□ 0.97
CDX1-202ENST00000616154 VN1R3Q9BXE9 311 aa21.13■□□□□ 0.97
CDX1-202ENST00000616154 ZSWIM4Q9H7M6 989 aa21.13■□□□□ 0.97
CDX1-202ENST00000616154 RSAD1Q9HA92 442 aa21.13■□□□□ 0.97
CDX1-202ENST00000616154 RGL1Q9NZL6 768 aa21.13■□□□□ 0.97
CDX1-202ENST00000616154 BTBD18B2RXH4 712 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 HOXA11P31270 313 aaPredicted RBP21.12■□□□□ 0.97
CDX1-202ENST00000616154 PTPN5P54829 565 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 HMGN5P82970 282 aaKnown RBP21.12■□□□□ 0.97
CDX1-202ENST00000616154 UBXN11Q5T124 520 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 IER5LQ5T953 404 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 ZBTB33Q86T24 672 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 FERMT3Q86UX7 667 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 ZNF280BQ86YH2 543 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 CCDC83Q8IWF9 413 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 TMEM87AQ8NBN3 555 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 SLC22A17Q8WUG5 538 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 DYDC2Q96IM9 177 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 TMEM175Q9BSA9 504 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 GBP3Q9H0R5 595 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 TSHZ2Q9NRE2 1034 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 BMP2KQ9NSY1 1161 aaPredicted RBP21.12■□□□□ 0.97
CDX1-202ENST00000616154 STK39Q9UEW8 545 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 CACNA1HO95180 2353 aa21.12■□□□□ 0.97
CDX1-202ENST00000616154 C2CD4DB7Z1M9 353 aa21.11■□□□□ 0.97
CDX1-202ENST00000616154 BAG4O95429 457 aaKnown RBP21.11■□□□□ 0.97
CDX1-202ENST00000616154 EPCAMP16422 314 aa21.11■□□□□ 0.97
CDX1-202ENST00000616154 TRIM29Q14134 588 aa21.11■□□□□ 0.97
CDX1-202ENST00000616154 CTTNQ14247 550 aaKnown RBP21.11■□□□□ 0.97
CDX1-202ENST00000616154 PTPN14Q15678 1187 aa21.11■□□□□ 0.97
CDX1-202ENST00000616154 XKR9Q5GH70 373 aa21.11■□□□□ 0.97
CDX1-202ENST00000616154 RARS2Q5T160 578 aaKnown RBP21.11■□□□□ 0.97
CDX1-202ENST00000616154 KIAA1841Q6NSI8 718 aa21.11■□□□□ 0.97
CDX1-202ENST00000616154 RNF149Q8NC42 400 aa21.11■□□□□ 0.97
CDX1-202ENST00000616154 MTRQ99707 1265 aa21.11■□□□□ 0.97
CDX1-202ENST00000616154 KANSL3Q9P2N6 904 aa21.11■□□□□ 0.97
CDX1-202ENST00000616154 TDRD15B5MCY1 1934 aaKnown RBP21.1■□□□□ 0.97
CDX1-202ENST00000616154 DDHD2O94830 711 aa21.1■□□□□ 0.97
CDX1-202ENST00000616154 NCLP19338 710 aaKnown RBP21.1■□□□□ 0.97
CDX1-202ENST00000616154 CYP4A11Q02928 519 aa21.1■□□□□ 0.97
CDX1-202ENST00000616154 PCBP1Q15365 356 aaKnown RBP eCLIP21.1■□□□□ 0.97
CDX1-202ENST00000616154 PPFIBP1Q86W92 1011 aa21.1■□□□□ 0.97
CDX1-202ENST00000616154 C12orf76Q8N812 135 aaPredicted RBP21.1■□□□□ 0.97
CDX1-202ENST00000616154 KREMEN2Q8NCW0 462 aa21.1■□□□□ 0.97
CDX1-202ENST00000616154 CNNM3Q8NE01 707 aa21.1■□□□□ 0.97
CDX1-202ENST00000616154 SORCS3Q9UPU3 1222 aa21.1■□□□□ 0.97
CDX1-202ENST00000616154 ZBTB39O15060 712 aa21.09■□□□□ 0.97
CDX1-202ENST00000616154 SLITRK3O94933 977 aa21.09■□□□□ 0.97
CDX1-202ENST00000616154 AFF1P51825 1210 aaKnown RBP21.09■□□□□ 0.97
CDX1-202ENST00000616154 MTMR3Q13615 1198 aa21.09■□□□□ 0.97
CDX1-202ENST00000616154 ATAT1Q5SQI0 421 aa21.09■□□□□ 0.97
CDX1-202ENST00000616154 UBALD2Q8IYN6 164 aa21.09■□□□□ 0.97
CDX1-202ENST00000616154 CCDC51Q96ER9 411 aa21.09■□□□□ 0.97
CDX1-202ENST00000616154 FAM193BQ96PV7 902 aaPredicted RBP21.09■□□□□ 0.97
CDX1-202ENST00000616154 UBN1Q9NPG3 1134 aa21.09■□□□□ 0.97
CDX1-202ENST00000616154 XPNPEP1Q9NQW7 623 aa21.09■□□□□ 0.97
CDX1-202ENST00000616154 C2orf16Q68DN1 1984 aa21.09■□□□□ 0.97
CDX1-202ENST00000616154 ERLIN2O94905 339 aa21.08■□□□□ 0.97
CDX1-202ENST00000616154 LYPLA2O95372 231 aa21.08■□□□□ 0.97
CDX1-202ENST00000616154 ALDH2P05091 517 aa21.08■□□□□ 0.97
CDX1-202ENST00000616154 WEE2P0C1S8 567 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms