RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 LDHDQ86WU2 507 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 CNTNAP5Q8WYK1 1306 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 MYO3AQ8NEV4 1616 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 SLC9A1P19634 815 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 CYP2C19P33261 490 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 BZW1Q7L1Q6 419 aaKnown RBP14.93□□□□□ -0.02
CPSF1-212ENST00000616140 AGPAT1Q99943 283 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 ETNK1Q9HBU6 452 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 RBM12Q9NTZ6 932 aaKnown RBP14.93□□□□□ -0.02
CPSF1-212ENST00000616140 CEMIPQ8WUJ3 1361 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 IQSEC2Q5JU85 1478 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 REREQ9P2R6 1566 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 WDR46O15213 610 aaKnown RBP14.93□□□□□ -0.02
CPSF1-212ENST00000616140 MAP3K7O43318 606 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 RASA1P20936 1047 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 CASP2P42575 452 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 PSMC1P62191 440 aaKnown RBP14.93□□□□□ -0.02
CPSF1-212ENST00000616140 ART3Q13508 389 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 PTPAQ15257 358 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 RAB44Q7Z6P3 723 aaPredicted RBP14.93□□□□□ -0.02
CPSF1-212ENST00000616140 METTL23Q86XA0 190 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 TTC25Q96NG3 672 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 REEP2Q9BRK0 252 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 VIPAS39Q9H9C1 493 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 SPATS2LQ9NUQ6 558 aaKnown RBP14.93□□□□□ -0.02
CPSF1-212ENST00000616140 STRIP2Q9ULQ0 834 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 CHD1O14646 1710 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 SCP2P22307 547 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 DHX34Q14147 1143 aaKnown RBP14.93□□□□□ -0.02
CPSF1-212ENST00000616140 ZBED8Q8IZ13 594 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 LRRC43Q8N309 656 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 EFHD1Q9BUP0 239 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 SLC9A2Q9UBY0 812 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 MID2Q9UJV3 735 aa14.93□□□□□ -0.02
CPSF1-212ENST00000616140 FAF1Q9UNN5 650 aaPredicted RBP14.93□□□□□ -0.02
CPSF1-212ENST00000616140 NDUFB10O96000 172 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 FGFR4P22455 802 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 TBXAS1P24557 533 aaPredicted RBP14.92□□□□□ -0.02
CPSF1-212ENST00000616140 PDIA2Q13087 525 aaKnown RBP14.92□□□□□ -0.02
CPSF1-212ENST00000616140 SLC12A1Q13621 1099 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 TGS1Q96RS0 853 aaKnown RBP14.92□□□□□ -0.02
CPSF1-212ENST00000616140 TRIM56Q9BRZ2 755 aaKnown RBP14.92□□□□□ -0.02
CPSF1-212ENST00000616140 RBAKQ9NYW8 714 aaPredicted RBP14.92□□□□□ -0.02
CPSF1-212ENST00000616140 POLR1AO95602 1720 aaPredicted RBP14.92□□□□□ -0.02
CPSF1-212ENST00000616140 SPECC1L-ADORA2AF8WAN1 911 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 STXBP3O00186 592 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 CAMTA2O94983 1202 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 KLK7P49862 253 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 KPNA2P52292 529 aaKnown RBP14.92□□□□□ -0.02
CPSF1-212ENST00000616140 IZUMO3Q5VZ72 239 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 RYBPQ8N488 228 aaPredicted RBP14.92□□□□□ -0.02
CPSF1-212ENST00000616140 CPSF3Q9UKF6 684 aaKnown RBP14.92□□□□□ -0.02
CPSF1-212ENST00000616140 INPP5FQ9Y2H2 1132 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 FHOD1Q9Y613 1164 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 ESYT2A0FGR8 921 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 NCAPHQ15003 741 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 AP1ARQ63HQ0 302 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 TBC1D16Q8TBP0 767 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 KCNB2Q92953 911 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 FAM167AQ96KS9 214 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 TRAIPQ9BWF2 469 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 ASNSD1Q9NWL6 643 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 HOXC10Q9NYD6 342 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 KLHL8Q9P2G9 620 aaPredicted RBP14.92□□□□□ -0.02
CPSF1-212ENST00000616140 ATF5Q9Y2D1 282 aaPredicted RBP14.92□□□□□ -0.02
CPSF1-212ENST00000616140 PCDHA10Q9Y5I2 948 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 PPP1R3GB7ZBB8 358 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 PI4K2BG5E9Z4 385 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 PDHBP11177 359 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 SDC4P31431 198 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 POLE2P56282 527 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 TSTA3Q13630 321 aaPredicted RBP14.92□□□□□ -0.02
CPSF1-212ENST00000616140 CALR3Q96L12 384 aaKnown RBP14.92□□□□□ -0.02
CPSF1-212ENST00000616140 TRIM51Q9BSJ1 452 aa14.92□□□□□ -0.02
CPSF1-212ENST00000616140 HSPA4LO95757 839 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 KRT7P08729 469 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 SSTR3P32745 418 aaPredicted RBP14.91□□□□□ -0.02
CPSF1-212ENST00000616140 KIAA1755Q5JYT7 1200 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 REXO1L1PQ8IX06 675 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 MORC4Q8TE76 937 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 STK33Q9BYT3 514 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 HERC5Q9UII4 1024 aaKnown RBP14.91□□□□□ -0.02
CPSF1-212ENST00000616140 AGO2Q9UKV8 859 aaKnown RBP14.91□□□□□ -0.02
CPSF1-212ENST00000616140 ANGPTL3Q9Y5C1 460 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 MYO3BQ8WXR4 1341 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 PSMD14O00487 310 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 KLRC1P26715 233 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 BCAR1P56945 870 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 KLHL38Q2WGJ6 581 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 DALRD3Q5D0E6 543 aaKnown RBP14.91□□□□□ -0.02
CPSF1-212ENST00000616140 ENOSF1Q7L5Y1 443 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 VPS39Q96JC1 886 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 MTRQ99707 1265 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 GOLPH3Q9H4A6 298 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 APEX2Q9UBZ4 518 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 FBXO40Q9UH90 709 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 CARSP49589 748 aaKnown RBP14.91□□□□□ -0.02
CPSF1-212ENST00000616140 OCRLQ01968 901 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 KRT17Q04695 432 aa14.91□□□□□ -0.02
CPSF1-212ENST00000616140 BYSLQ13895 437 aaKnown RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms