RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 GJD3Q8N144 294 aa28.92■■■□□ 2.22
PNKP-216ENST00000601816 URGCPQ8TCY9 931 aa28.92■■■□□ 2.22
PNKP-216ENST00000601816 CCDC51Q96ER9 411 aa28.92■■■□□ 2.22
PNKP-216ENST00000601816 CDCA3Q99618 268 aaPredicted RBP28.92■■■□□ 2.22
PNKP-216ENST00000601816 NFKBIZQ9BYH8 718 aa28.92■■■□□ 2.22
PNKP-216ENST00000601816 NGRNQ9NPE2 291 aaKnown RBP28.92■■■□□ 2.22
PNKP-216ENST00000601816 CD320Q9NPF0 282 aa28.92■■■□□ 2.22
PNKP-216ENST00000601816 CNTNAP2Q9UHC6 1331 aa28.92■■■□□ 2.22
PNKP-216ENST00000601816 CARNS1A5YM72 827 aa28.91■■■□□ 2.22
PNKP-216ENST00000601816 MBTPS2O43462 519 aa28.91■■■□□ 2.22
PNKP-216ENST00000601816 SSTR3P32745 418 aaPredicted RBP28.91■■■□□ 2.22
PNKP-216ENST00000601816 DUSP6Q16828 381 aa28.91■■■□□ 2.22
PNKP-216ENST00000601816 MCTP1Q6DN14 999 aa28.91■■■□□ 2.22
PNKP-216ENST00000601816 NOTUMQ6P988 496 aa28.91■■■□□ 2.22
PNKP-216ENST00000601816 AGMOQ6ZNB7 445 aa28.91■■■□□ 2.22
PNKP-216ENST00000601816 CNNM3Q8NE01 707 aa28.91■■■□□ 2.22
PNKP-216ENST00000601816 TMEM169Q96HH4 297 aa28.91■■■□□ 2.22
PNKP-216ENST00000601816 MSLNLQ96KJ4 702 aa28.91■■■□□ 2.22
PNKP-216ENST00000601816 RSAD1Q9HA92 442 aa28.91■■■□□ 2.22
PNKP-216ENST00000601816 GPRC5CQ9NQ84 441 aa28.91■■■□□ 2.22
PNKP-216ENST00000601816 PRKAG3Q9UGI9 489 aa28.91■■■□□ 2.22
PNKP-216ENST00000601816 PCDHB6Q9Y5E3 794 aa28.91■■■□□ 2.22
PNKP-216ENST00000601816 ARHGEF35A5YM69 484 aa28.9■■■□□ 2.22
PNKP-216ENST00000601816 NT5C1B-RDH14C9J2C7 533 aa28.9■■■□□ 2.22
PNKP-216ENST00000601816 GLP2RO95838 553 aa28.9■■■□□ 2.22
PNKP-216ENST00000601816 NCLP19338 710 aaKnown RBP28.9■■■□□ 2.22
PNKP-216ENST00000601816 MUTP22033 750 aa28.9■■■□□ 2.22
PNKP-216ENST00000601816 CCT6AP40227 531 aaKnown RBP28.9■■■□□ 2.22
PNKP-216ENST00000601816 PTGDRQ13258 359 aa28.9■■■□□ 2.22
PNKP-216ENST00000601816 TMC7Q7Z402 723 aa28.9■■■□□ 2.22
PNKP-216ENST00000601816 CPB2Q96IY4 423 aa28.9■■■□□ 2.22
PNKP-216ENST00000601816 RAB34Q9BZG1 259 aa28.9■■■□□ 2.22
PNKP-216ENST00000601816 NRDE2Q9H7Z3 1164 aa28.9■■■□□ 2.22
PNKP-216ENST00000601816 CLEC1BQ9P126 229 aa28.9■■■□□ 2.22
PNKP-216ENST00000601816 LRWD1Q9UFC0 647 aa28.9■■■□□ 2.22
PNKP-216ENST00000601816 BARX2Q9UMQ3 279 aaPredicted RBP28.9■■■□□ 2.22
PNKP-216ENST00000601816 LRRIQ4A6NIV6 560 aa28.89■■■□□ 2.22
PNKP-216ENST00000601816 GJB2P29033 226 aa28.89■■■□□ 2.22
PNKP-216ENST00000601816 SMAD2Q15796 467 aaKnown RBP28.89■■■□□ 2.22
PNKP-216ENST00000601816 PADI6Q6TGC4 694 aa28.89■■■□□ 2.22
PNKP-216ENST00000601816 GBP3Q9H0R5 595 aa28.89■■■□□ 2.22
PNKP-216ENST00000601816 ITGA4P13612 1032 aa28.88■■■□□ 2.21
PNKP-216ENST00000601816 AMHR2Q16671 573 aa28.88■■■□□ 2.21
PNKP-216ENST00000601816 EIF2AQ9BY44 585 aaKnown RBP28.88■■■□□ 2.21
PNKP-216ENST00000601816 CSRNP2Q9H175 543 aa28.88■■■□□ 2.21
PNKP-216ENST00000601816 UBN1Q9NPG3 1134 aa28.88■■■□□ 2.21
PNKP-216ENST00000601816 IPPQ9Y573 584 aa28.88■■■□□ 2.21
PNKP-216ENST00000601816 STK24Q9Y6E0 443 aa28.88■■■□□ 2.21
PNKP-216ENST00000601816 HIDE1A8MVS5 230 aa28.87■■■□□ 2.21
PNKP-216ENST00000601816 H3BQV1 296 aa28.87■■■□□ 2.21
PNKP-216ENST00000601816 LAD1O00515 517 aa28.87■■■□□ 2.21
PNKP-216ENST00000601816 ARF4P18085 180 aaPredicted RBP28.87■■■□□ 2.21
PNKP-216ENST00000601816 CYP11B2P19099 503 aa28.87■■■□□ 2.21
PNKP-216ENST00000601816 ZP2Q05996 745 aa28.87■■■□□ 2.21
PNKP-216ENST00000601816 COASYQ13057 564 aa28.87■■■□□ 2.21
PNKP-216ENST00000601816 PDIA5Q14554 519 aa28.87■■■□□ 2.21
PNKP-216ENST00000601816 SMC1AQ14683 1233 aaKnown RBP28.87■■■□□ 2.21
PNKP-216ENST00000601816 BMS1Q14692 1282 aaKnown RBP28.87■■■□□ 2.21
PNKP-216ENST00000601816 ADHFE1Q8IWW8 467 aa28.87■■■□□ 2.21
PNKP-216ENST00000601816 SMG8Q8ND04 991 aaKnown RBP28.87■■■□□ 2.21
PNKP-216ENST00000601816 C1QTNF1Q9BXJ1 281 aa28.87■■■□□ 2.21
PNKP-216ENST00000601816 KANSL3Q9P2N6 904 aa28.87■■■□□ 2.21
PNKP-216ENST00000601816 EYA4O95677 639 aa28.86■■■□□ 2.21
PNKP-216ENST00000601816 GALTP07902 379 aa28.86■■■□□ 2.21
PNKP-216ENST00000601816 SRGAP2BP0DMP2 458 aa28.86■■■□□ 2.21
PNKP-216ENST00000601816 TMEM173Q86WV6 379 aaPredicted RBP28.86■■■□□ 2.21
PNKP-216ENST00000601816 IGSF22Q8N9C0 903 aa28.86■■■□□ 2.21
PNKP-216ENST00000601816 SMRP1Q8NCR6 262 aa28.86■■■□□ 2.21
PNKP-216ENST00000601816 VN1R2Q8NFZ6 395 aa28.86■■■□□ 2.21
PNKP-216ENST00000601816 SNX29Q8TEQ0 813 aa28.86■■■□□ 2.21
PNKP-216ENST00000601816 TRIM6Q9C030 488 aaPredicted RBP28.86■■■□□ 2.21
PNKP-216ENST00000601816 EPHX3Q9H6B9 360 aa28.86■■■□□ 2.21
PNKP-216ENST00000601816 EIF4ENIF1Q9NRA8 985 aaKnown RBP28.86■■■□□ 2.21
PNKP-216ENST00000601816 DNAJB4Q9UDY4 337 aa28.86■■■□□ 2.21
PNKP-216ENST00000601816 SMC3Q9UQE7 1217 aa28.86■■■□□ 2.21
PNKP-216ENST00000601816 B4GALT5O43286 388 aa28.85■■■□□ 2.21
PNKP-216ENST00000601816 SLC11A1P49279 550 aa28.85■■■□□ 2.21
PNKP-216ENST00000601816 RBM10P98175 930 aaKnown RBP28.85■■■□□ 2.21
PNKP-216ENST00000601816 ECM1Q16610 540 aa28.85■■■□□ 2.21
PNKP-216ENST00000601816 RILPL1Q5EBL4 403 aa28.85■■■□□ 2.21
PNKP-216ENST00000601816 ZNF280BQ86YH2 543 aa28.85■■■□□ 2.21
PNKP-216ENST00000601816 ZBTB8OSQ8IWT0 167 aa28.85■■■□□ 2.21
PNKP-216ENST00000601816 HACE1Q8IYU2 909 aa28.85■■■□□ 2.21
PNKP-216ENST00000601816 MRPL43Q8N983 215 aaKnown RBP28.85■■■□□ 2.21
PNKP-216ENST00000601816 KHSRPQ92945 711 aaKnown RBP eCLIP28.85■■■□□ 2.21
PNKP-216ENST00000601816 IGSF21Q96ID5 467 aa28.85■■■□□ 2.21
PNKP-216ENST00000601816 FAM193BQ96PV7 902 aaPredicted RBP28.85■■■□□ 2.21
PNKP-216ENST00000601816 KIAA1024Q9UPX6 916 aa28.85■■■□□ 2.21
PNKP-216ENST00000601816 ZSCAN21Q9Y5A6 473 aaPredicted RBP28.85■■■□□ 2.21
PNKP-216ENST00000601816 POMCP01189 267 aa28.84■■■□□ 2.21
PNKP-216ENST00000601816 PRPHP41219 470 aa28.84■■■□□ 2.21
PNKP-216ENST00000601816 AFF1P51825 1210 aaKnown RBP28.84■■■□□ 2.21
PNKP-216ENST00000601816 CDCA2Q69YH5 1023 aaPredicted RBP28.84■■■□□ 2.21
PNKP-216ENST00000601816 VPS52Q8N1B4 723 aa28.84■■■□□ 2.21
PNKP-216ENST00000601816 POP1Q99575 1024 aaKnown RBP28.84■■■□□ 2.21
PNKP-216ENST00000601816 C2orf40Q9H1Z8 148 aa28.84■■■□□ 2.21
PNKP-216ENST00000601816 BHMT2Q9H2M3 363 aa28.84■■■□□ 2.21
PNKP-216ENST00000601816 PRMT7Q9NVM4 692 aaPredicted RBP28.84■■■□□ 2.21
PNKP-216ENST00000601816 HES2Q9Y543 173 aa28.84■■■□□ 2.21
PNKP-216ENST00000601816 B4GALT3O60512 393 aa28.83■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms