RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ZNF570Q96NI8 536 aa19.77■□□□□ 0.75
UPF1-210ENST00000600689 YIPF3Q9GZM5 350 aa19.77■□□□□ 0.75
UPF1-210ENST00000600689 NSRP1Q9H0G5 558 aaKnown RBP19.77■□□□□ 0.75
UPF1-210ENST00000600689 RASAL2Q9UJF2 1139 aa19.77■□□□□ 0.75
UPF1-210ENST00000600689 DNM3Q9UQ16 869 aa19.77■□□□□ 0.75
UPF1-210ENST00000600689 KDM3AQ9Y4C1 1321 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 SLC12A3P55017 1021 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 FRMD5Q7Z6J6 570 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 ZFPM1Q8IX07 1006 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 FAM186BQ8IYM0 893 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 ARHGEF2Q92974 986 aaKnown RBP19.76■□□□□ 0.75
UPF1-210ENST00000600689 MRRFQ96E11 262 aaKnown RBP19.76■□□□□ 0.75
UPF1-210ENST00000600689 MTRF1LQ9UGC7 380 aaKnown RBP19.76■□□□□ 0.75
UPF1-210ENST00000600689 BTNL10A8MVZ5 291 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 MMP10P09238 476 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 FERP16591 822 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 SOX5P35711 763 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 GABPAQ06546 454 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 AUHQ13825 339 aaKnown RBP19.76■□□□□ 0.75
UPF1-210ENST00000600689 CNGA2Q16280 664 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 SHROOM1Q2M3G4 852 aaPredicted RBP19.76■□□□□ 0.75
UPF1-210ENST00000600689 EDRF1Q3B7T1 1238 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 CBWD6Q4V339 395 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 CBWD3Q5JTY5 395 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 CBWD5Q5RIA9 395 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 BZW1Q7L1Q6 419 aaKnown RBP19.76■□□□□ 0.75
UPF1-210ENST00000600689 EXOC3L1Q86VI1 746 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 PRELID2Q8N945 189 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 FAM118BQ9BPY3 351 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 GRHL1Q9NZI5 618 aa19.76■□□□□ 0.75
UPF1-210ENST00000600689 ESYT2A0FGR8 921 aa19.75■□□□□ 0.75
UPF1-210ENST00000600689 SNX3O60493 162 aa19.75■□□□□ 0.75
UPF1-210ENST00000600689 MARSP56192 900 aaKnown RBP19.75■□□□□ 0.75
UPF1-210ENST00000600689 IKQ13123 557 aaPredicted RBP19.75■□□□□ 0.75
UPF1-210ENST00000600689 MYCT1Q8N699 235 aa19.75■□□□□ 0.75
UPF1-210ENST00000600689 CYP2W1Q8TAV3 490 aa19.75■□□□□ 0.75
UPF1-210ENST00000600689 C1orf54Q8WWF1 131 aa19.75■□□□□ 0.75
UPF1-210ENST00000600689 ASTN1O14525 1302 aa19.75■□□□□ 0.75
UPF1-210ENST00000600689 ASAP2O43150 1006 aa19.75■□□□□ 0.75
UPF1-210ENST00000600689 NT5C2P49902 561 aa19.75■□□□□ 0.75
UPF1-210ENST00000600689 CTTNQ14247 550 aaKnown RBP19.75■□□□□ 0.75
UPF1-210ENST00000600689 C6orf118Q5T5N4 469 aa19.75■□□□□ 0.75
UPF1-210ENST00000600689 ARHGAP27Q6ZUM4 889 aa19.75■□□□□ 0.75
UPF1-210ENST00000600689 FMNL3Q8IVF7 1028 aa19.75■□□□□ 0.75
UPF1-210ENST00000600689 TXLNGYQ9BZA5 131 aa19.75■□□□□ 0.75
UPF1-210ENST00000600689 NOP53Q9NZM5 478 aaKnown RBP19.75■□□□□ 0.75
UPF1-210ENST00000600689 LRRC37AA6NMS7 1700 aa19.75■□□□□ 0.75
UPF1-210ENST00000600689 PNMA6FA0A0J9YX94 578 aa19.74■□□□□ 0.75
UPF1-210ENST00000600689 PRKCIP41743 596 aa19.74■□□□□ 0.75
UPF1-210ENST00000600689 ZNF622Q969S3 477 aaKnown RBP eCLIP19.74■□□□□ 0.75
UPF1-210ENST00000600689 USP15Q9Y4E8 981 aaPredicted RBP19.74■□□□□ 0.75
UPF1-210ENST00000600689 PCDHA1Q9Y5I3 950 aa19.74■□□□□ 0.75
UPF1-210ENST00000600689 EME2A4GXA9 379 aaPredicted RBP19.74■□□□□ 0.75
UPF1-210ENST00000600689 G3V3G9 751 aa19.74■□□□□ 0.75
UPF1-210ENST00000600689 RIPK2O43353 540 aa19.74■□□□□ 0.75
UPF1-210ENST00000600689 SEPT2Q15019 361 aa19.74■□□□□ 0.75
UPF1-210ENST00000600689 DCAF8Q5TAQ9 597 aa19.74■□□□□ 0.75
UPF1-210ENST00000600689 CDC42EP5Q6NZY7 148 aa19.74■□□□□ 0.75
UPF1-210ENST00000600689 P3H4Q92791 437 aa19.74■□□□□ 0.75
UPF1-210ENST00000600689 RMDN2Q96LZ7 410 aa19.74■□□□□ 0.75
UPF1-210ENST00000600689 ITIH4Q14624 930 aa19.74■□□□□ 0.75
UPF1-210ENST00000600689 PGM2Q96G03 612 aa19.74■□□□□ 0.75
UPF1-210ENST00000600689 SERPINB13Q9UIV8 391 aa19.74■□□□□ 0.75
UPF1-210ENST00000600689 H0Y3Z8 333 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 FOXN3O00409 490 aaPredicted RBP19.73■□□□□ 0.75
UPF1-210ENST00000600689 RTN2O75298 545 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 FTLP02792 175 aaPredicted RBP19.73■□□□□ 0.75
UPF1-210ENST00000600689 DLATP10515 647 aaKnown RBP19.73■□□□□ 0.75
UPF1-210ENST00000600689 HOXA13P31271 388 aaPredicted RBP19.73■□□□□ 0.75
UPF1-210ENST00000600689 PDE6CP51160 858 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 JAM2P57087 298 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 TCP10Q12799 353 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 SEC14L1Q92503 715 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 BHMG1C9JSJ3 638 aaPredicted RBP19.73■□□□□ 0.75
UPF1-210ENST00000600689 APBA3O96018 575 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 NUDT17P0C025 328 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 NOVP48745 357 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 ADCY2Q08462 1091 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 FITM2Q8N6M3 262 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 MAGEC3Q8TD91 643 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 HOOK2Q96ED9 719 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 ANO3Q9BYT9 981 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 PCIF1Q9H4Z3 704 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 ASIC3Q9UHC3 531 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 FOCADQ5VW36 1801 aa19.73■□□□□ 0.75
UPF1-210ENST00000600689 SPOPO43791 374 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 AGTP01019 485 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 PYGMP11217 842 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 NPR1P16066 1061 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 COMTP21964 271 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 RPL13P26373 211 aaKnown RBP19.72■□□□□ 0.75
UPF1-210ENST00000600689 SHMT1P34896 483 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 APOBEC3HQ6NTF7 200 aaKnown RBP19.72■□□□□ 0.75
UPF1-210ENST00000600689 KIAA0825Q8IV33 1275 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 TPH2Q8IWU9 490 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 NLGN1Q8N2Q7 840 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 CENPTQ96BT3 561 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 SUN1O94901 812 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 LMNB1P20700 586 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 HP1BP3Q5SSJ5 553 aaPredicted RBP19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms