RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 PALB2Q86YC2 1186 aa15.72■□□□□ 0.11
VRK3-217ENST00000599538 SLC30A5Q8TAD4 765 aa15.72■□□□□ 0.11
VRK3-217ENST00000599538 CAGE1Q8TC20 777 aa15.72■□□□□ 0.11
VRK3-217ENST00000599538 SYT11Q9BT88 431 aa15.72■□□□□ 0.11
VRK3-217ENST00000599538 SUGCTQ9HAC7 445 aa15.72■□□□□ 0.11
VRK3-217ENST00000599538 ATP6V0A4Q9HBG4 840 aa15.72■□□□□ 0.11
VRK3-217ENST00000599538 UBE2TQ9NPD8 197 aaPredicted RBP15.72■□□□□ 0.11
VRK3-217ENST00000599538 FBXO40Q9UH90 709 aa15.72■□□□□ 0.11
VRK3-217ENST00000599538 AGTPBP1Q9UPW5 1226 aa15.72■□□□□ 0.11
VRK3-217ENST00000599538 CCDC151A5D8V7 595 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 SOCS7O14512 581 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 DKC1O60832 514 aaKnown RBP eCLIP15.71■□□□□ 0.116e-11■■■■■ 26.8
VRK3-217ENST00000599538 ARIH2O95376 493 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 GJA5P36382 358 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 MAP2K1Q02750 393 aaPredicted RBP15.71■□□□□ 0.11
VRK3-217ENST00000599538 PTPROQ16827 1216 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 MCPH1Q8NEM0 835 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 U2AF1L4Q8WU68 220 aaKnown RBP15.71■□□□□ 0.11
VRK3-217ENST00000599538 SEMA4DQ92854 862 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 MS4A14Q96JA4 679 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 CEP89Q96ST8 783 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 HINFPQ9BQA5 517 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 LUC7LQ9NQ29 371 aaKnown RBP15.71■□□□□ 0.11
VRK3-217ENST00000599538 KCNH4Q9UQ05 1017 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 PCDHGC5Q9Y5F6 944 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 TMCO5BA8MYB1 307 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 CXCL11O14625 94 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 OATP04181 439 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 PRLRP16471 622 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 PLA2G4AP47712 749 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 BMS1Q14692 1282 aaKnown RBP15.71■□□□□ 0.11
VRK3-217ENST00000599538 EMC2Q15006 297 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 LONRF2Q1L5Z9 754 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 EAPPQ56P03 285 aaPredicted RBP15.71■□□□□ 0.11
VRK3-217ENST00000599538 ASAP3Q8TDY4 903 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 PARD3BQ8TEW8 1205 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 ZBTB9Q96C00 473 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 MAF1Q9H063 256 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 C17orf75Q9HAS0 396 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 ARFGAP3Q9NP61 516 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 ARHGAP28Q9P2N2 729 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 EXOC7Q9UPT5 735 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 HYOU1Q9Y4L1 999 aa15.71■□□□□ 0.11
VRK3-217ENST00000599538 MCM3APO60318 1980 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 PCNTO95613 3336 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 IGKV6D-21A0A0A0MT36 114 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 LRRIQ3A6PVS8 624 aaPredicted RBP15.7■□□□□ 0.1
VRK3-217ENST00000599538 MXI1P50539 228 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 POLGP54098 1239 aaPredicted RBP15.7■□□□□ 0.1
VRK3-217ENST00000599538 MRPS25P82663 173 aaKnown RBP15.7■□□□□ 0.1
VRK3-217ENST00000599538 CKAP4Q07065 602 aaKnown RBP15.7■□□□□ 0.1
VRK3-217ENST00000599538 TMEM63BQ5T3F8 832 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 DPY19L2Q6NUT2 758 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 TXLNBQ8N3L3 684 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 POMGNT1Q8WZA1 660 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 L3MBTL3Q96JM7 780 aaPredicted RBP15.7■□□□□ 0.1
VRK3-217ENST00000599538 FUT8Q9BYC5 575 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 ABCB6Q9NP58 842 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 TAS2R14Q9NYV8 317 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 HNRNPDLO14979 420 aaKnown RBP15.7■□□□□ 0.1
VRK3-217ENST00000599538 MAPK13O15264 365 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 ZMYND10O75800 440 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 NF2P35240 595 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 SNRPFP62306 86 aaKnown RBP15.7■□□□□ 0.1
VRK3-217ENST00000599538 BRD3Q15059 726 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 BEND6Q5SZJ8 279 aaPredicted RBP15.7■□□□□ 0.1
VRK3-217ENST00000599538 GPAT2Q6NUI2 795 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 USP50Q70EL3 339 aaPredicted RBP15.7■□□□□ 0.1
VRK3-217ENST00000599538 SLC17A8Q8NDX2 589 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 SLC20A1Q8WUM9 679 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 HVCN1Q96D96 273 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 DHX33Q9H6R0 707 aaKnown RBP15.7■□□□□ 0.1
VRK3-217ENST00000599538 ACP6Q9NPH0 428 aa15.7■□□□□ 0.1
VRK3-217ENST00000599538 LRRC37A2A6NM11 1700 aa15.69■□□□□ 0.1
VRK3-217ENST00000599538 GGPS1O95749 300 aa15.69■□□□□ 0.1
VRK3-217ENST00000599538 TCP1P17987 556 aaKnown RBP15.69■□□□□ 0.1
VRK3-217ENST00000599538 GLRA2P23416 452 aa15.69■□□□□ 0.1
VRK3-217ENST00000599538 GALCP54803 685 aa15.69■□□□□ 0.1
VRK3-217ENST00000599538 WNT7BP56706 349 aa15.69■□□□□ 0.1
VRK3-217ENST00000599538 RTP1P59025 263 aa15.69■□□□□ 0.1
VRK3-217ENST00000599538 PPIL2Q13356 520 aa15.69■□□□□ 0.1
VRK3-217ENST00000599538 DRP2Q13474 957 aa15.69■□□□□ 0.1
VRK3-217ENST00000599538 MEI1Q5TIA1 1274 aa15.69■□□□□ 0.1
VRK3-217ENST00000599538 KRT222Q8N1A0 295 aa15.69■□□□□ 0.1
VRK3-217ENST00000599538 FBXL18Q96ME1 805 aa15.69■□□□□ 0.1
VRK3-217ENST00000599538 BTNL10A8MVZ5 291 aa15.68■□□□□ 0.1
VRK3-217ENST00000599538 EDN1P05305 212 aa15.68■□□□□ 0.1
VRK3-217ENST00000599538 POTEJP0CG39 1038 aa15.68■□□□□ 0.1
VRK3-217ENST00000599538 MATR3P43243 847 aaKnown RBP eCLIP15.68■□□□□ 0.1
VRK3-217ENST00000599538 NOP2P46087 812 aaKnown RBP15.68■□□□□ 0.1
VRK3-217ENST00000599538 C10orf76Q5T2E6 689 aa15.68■□□□□ 0.1
VRK3-217ENST00000599538 TRIM50Q86XT4 487 aa15.68■□□□□ 0.1
VRK3-217ENST00000599538 SPATA4Q8NEY3 305 aa15.68■□□□□ 0.1
VRK3-217ENST00000599538 HDAC7Q8WUI4 952 aa15.68■□□□□ 0.1
VRK3-217ENST00000599538 BICD1Q96G01 975 aa15.68■□□□□ 0.1
VRK3-217ENST00000599538 IFT74Q96LB3 600 aa15.68■□□□□ 0.1
VRK3-217ENST00000599538 KREMEN1Q96MU8 473 aa15.68■□□□□ 0.1
VRK3-217ENST00000599538 FAM213AQ9BRX8 229 aa15.68■□□□□ 0.1
VRK3-217ENST00000599538 HAPLN2Q9GZV7 340 aa15.68■□□□□ 0.1
VRK3-217ENST00000599538 P4HA2O15460 535 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms