RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 SFPQP23246 707 aaKnown RBP eCLIP20.07■□□□□ 0.8
LIG1-216ENST00000598938 NPTX2P47972 431 aa20.07■□□□□ 0.8
LIG1-216ENST00000598938 PEX3P56589 373 aa20.07■□□□□ 0.8
LIG1-216ENST00000598938 MBTD1Q05BQ5 628 aa20.07■□□□□ 0.8
LIG1-216ENST00000598938 NFX1Q12986 1120 aaKnown RBP20.07■□□□□ 0.8
LIG1-216ENST00000598938 LONRF3Q496Y0 759 aa20.07■□□□□ 0.8
LIG1-216ENST00000598938 DYMQ7RTS9 669 aa20.07■□□□□ 0.8
LIG1-216ENST00000598938 SPIRE2Q8WWL2 714 aa20.07■□□□□ 0.8
LIG1-216ENST00000598938 STAMQ92783 540 aa20.07■□□□□ 0.8
LIG1-216ENST00000598938 FTHL17Q9BXU8 183 aa20.07■□□□□ 0.8
LIG1-216ENST00000598938 LRRC27Q9C0I9 530 aa20.07■□□□□ 0.8
LIG1-216ENST00000598938 C2orf40Q9H1Z8 148 aa20.07■□□□□ 0.8
LIG1-216ENST00000598938 PTPRSQ13332 1948 aa20.06■□□□□ 0.8
LIG1-216ENST00000598938 GADD45BO75293 160 aaPredicted RBP20.06■□□□□ 0.8
LIG1-216ENST00000598938 AMPD3Q01432 767 aa20.06■□□□□ 0.8
LIG1-216ENST00000598938 DMP1Q13316 513 aaPredicted RBP20.06■□□□□ 0.8
LIG1-216ENST00000598938 DSC3Q14574 896 aa20.06■□□□□ 0.8
LIG1-216ENST00000598938 PCBP1Q15365 356 aaKnown RBP eCLIP20.06■□□□□ 0.8
LIG1-216ENST00000598938 CNNM4Q6P4Q7 775 aa20.06■□□□□ 0.8
LIG1-216ENST00000598938 ZBTB8OSQ8IWT0 167 aa20.06■□□□□ 0.8
LIG1-216ENST00000598938 CEP57L1Q8IYX8 460 aa20.06■□□□□ 0.8
LIG1-216ENST00000598938 FMR1NBQ8N0W7 255 aaPredicted RBP20.06■□□□□ 0.8
LIG1-216ENST00000598938 ENGASEQ8NFI3 743 aa20.06■□□□□ 0.8
LIG1-216ENST00000598938 DEPTORQ8TB45 409 aa20.06■□□□□ 0.8
LIG1-216ENST00000598938 LINC01599Q8WXQ3 324 aa20.06■□□□□ 0.8
LIG1-216ENST00000598938 NTPCRQ9BSD7 190 aaKnown RBP20.06■□□□□ 0.8
LIG1-216ENST00000598938 TRIM9Q9C026 710 aa20.06■□□□□ 0.8
LIG1-216ENST00000598938 PARVGQ9HBI0 331 aa20.06■□□□□ 0.8
LIG1-216ENST00000598938 LARSQ9P2J5 1176 aaKnown RBP20.06■□□□□ 0.8
LIG1-216ENST00000598938 HCN4Q9Y3Q4 1203 aa20.06■□□□□ 0.8
LIG1-216ENST00000598938 INO80B-WBP1J3KQ70 363 aa20.05■□□□□ 0.8
LIG1-216ENST00000598938 MGEA5O60502 916 aa20.05■□□□□ 0.8
LIG1-216ENST00000598938 TBCAO75347 108 aaKnown RBP20.05■□□□□ 0.8
LIG1-216ENST00000598938 FAM13AO94988 1023 aa20.05■□□□□ 0.8
LIG1-216ENST00000598938 ZNF202O95125 648 aa20.05■□□□□ 0.8
LIG1-216ENST00000598938 WDR5P61964 334 aaKnown RBP20.05■□□□□ 0.8
LIG1-216ENST00000598938 TAP1Q03518 808 aa20.05■□□□□ 0.8
LIG1-216ENST00000598938 AMHR2Q16671 573 aa20.05■□□□□ 0.8
LIG1-216ENST00000598938 CATSPER4Q7RTX7 472 aa20.05■□□□□ 0.8
LIG1-216ENST00000598938 C7orf25Q9BPX7 421 aa20.05■□□□□ 0.8
LIG1-216ENST00000598938 KIFC3Q9BVG8 833 aa20.05■□□□□ 0.8
LIG1-216ENST00000598938 CCDC113Q9H0I3 377 aa20.05■□□□□ 0.8
LIG1-216ENST00000598938 KMT5AQ9NQR1 393 aa20.05■□□□□ 0.8
LIG1-216ENST00000598938 ARHGAP28Q9P2N2 729 aa20.05■□□□□ 0.8
LIG1-216ENST00000598938 KCNG1Q9UIX4 513 aa20.05■□□□□ 0.8
LIG1-216ENST00000598938 MICAL3Q7RTP6 2002 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.04■□□□□ 0.8
LIG1-216ENST00000598938 FRMD3A2A2Y4 597 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 CCDC169A6NNP5 214 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 ENPP3O14638 875 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 EFNA5P52803 228 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 NCKAP1LP55160 1127 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 FAM160A1Q05DH4 1040 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 SNW1Q13573 536 aaKnown RBP20.04■□□□□ 0.8
LIG1-216ENST00000598938 FAM187BQ17R55 369 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 PPP4R3CPQ6ZMV5 832 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 KRBA2Q6ZNG9 492 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 RTN4RL1Q86UN2 441 aaPredicted RBP20.04■□□□□ 0.8
LIG1-216ENST00000598938 HERC6Q8IVU3 1022 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 MYCT1Q8N699 235 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 HLA-CQ95604 372 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 PAGE5Q96GU1 130 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 FZD8Q9H461 694 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 AGPAT5Q9NUQ2 364 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 LMCD1Q9NZU5 365 aa20.04■□□□□ 0.8
LIG1-216ENST00000598938 SLC16A4O15374 487 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 TLL1O43897 1013 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 TSPAN1O60635 241 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 GAP43P17677 238 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 AFMP43652 599 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 SMTNP53814 917 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 UBE2HP62256 183 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.03■□□□□ 0.8
LIG1-216ENST00000598938 GRAMD1CQ8IYS0 662 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 TMEM161BQ8NDZ6 487 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 KCNN1Q92952 543 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 PRIMPOLQ96LW4 560 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 GBP4Q96PP9 640 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 FIZ1Q96SL8 496 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 TMEM134Q9H6X4 195 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 CHST12Q9NRB3 414 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 RGS18Q9NS28 235 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 PRMT7Q9NVM4 692 aaPredicted RBP20.03■□□□□ 0.8
LIG1-216ENST00000598938 SEL1LQ9UBV2 794 aa20.03■□□□□ 0.8
LIG1-216ENST00000598938 PHLPP2Q6ZVD8 1323 aa20.02■□□□□ 0.8
LIG1-216ENST00000598938 RFXAPO00287 272 aa20.02■□□□□ 0.8
LIG1-216ENST00000598938 PRPF40AO75400 957 aaKnown RBP20.02■□□□□ 0.8
LIG1-216ENST00000598938 ERLIN2O94905 339 aa20.02■□□□□ 0.8
LIG1-216ENST00000598938 LIG1P18858 919 aa20.02■□□□□ 0.8
LIG1-216ENST00000598938 HOXA11P31270 313 aaPredicted RBP20.02■□□□□ 0.8
LIG1-216ENST00000598938 KCNJ6P48051 423 aa20.02■□□□□ 0.8
LIG1-216ENST00000598938 DEFB103AP81534 67 aa20.02■□□□□ 0.8
LIG1-216ENST00000598938 MAPK6Q16659 721 aa20.02■□□□□ 0.8
LIG1-216ENST00000598938 TAS1R3Q7RTX0 852 aa20.02■□□□□ 0.8
LIG1-216ENST00000598938 SFR1Q86XK3 245 aa20.02■□□□□ 0.8
LIG1-216ENST00000598938 CNNM3Q8NE01 707 aa20.02■□□□□ 0.8
LIG1-216ENST00000598938 ADAM2Q99965 735 aa20.02■□□□□ 0.8
LIG1-216ENST00000598938 LRFN3Q9BTN0 628 aa20.02■□□□□ 0.8
LIG1-216ENST00000598938 ZHX3Q9H4I2 956 aa20.02■□□□□ 0.8
LIG1-216ENST00000598938 PANK4Q9NVE7 773 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms