RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 C5orf67F2Z3F1 127 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 SPTLC2O15270 562 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 YEATS4O95619 227 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 TXLNAP40222 546 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 PEX3P56589 373 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 RAD51AP2Q09MP3 1159 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 DHX8Q14562 1220 aaKnown RBP15.3■□□□□ 0.04
UPF1-205ENST00000598209 MCM6Q14566 821 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 CCDC85BQ15834 202 aaPredicted RBP15.3■□□□□ 0.04
UPF1-205ENST00000598209 MAPK6Q16659 721 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 FAM187BQ17R55 369 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 LONRF3Q496Y0 759 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 PPP4R3CPQ6ZMV5 832 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 PPM1EQ8WY54 764 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 RAD54LQ92698 747 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 PGBD4Q96DM1 585 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 PRIMPOLQ96LW4 560 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 C11orf84Q9BUA3 381 aaPredicted RBP15.3■□□□□ 0.04
UPF1-205ENST00000598209 PLVAPQ9BX97 442 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 EIF2AQ9BY44 585 aaKnown RBP15.3■□□□□ 0.04
UPF1-205ENST00000598209 CCDC113Q9H0I3 377 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 FZD8Q9H461 694 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 TYW1Q9NV66 732 aaKnown RBP15.3■□□□□ 0.04
UPF1-205ENST00000598209 KCND2Q9NZV8 630 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 HCSTQ9UBK5 93 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 DAXXQ9UER7 740 aaPredicted RBP15.3■□□□□ 0.04
UPF1-205ENST00000598209 CCDC39Q9UFE4 941 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 TRANK1O15050 2925 aa15.3■□□□□ 0.04
UPF1-205ENST00000598209 CNTNAP2Q9UHC6 1331 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 NPHP3-ACAD11A0A0J9YXS1 232 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 CCDC169A6NNP5 214 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 MEIS3P2A8K0S8 358 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 SFI1A8K8P3 1242 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 PPP6R2O75170 966 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 BRD1O95696 1058 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 PRKCBP05771 671 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 LIG1P18858 919 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 NPTX2P47972 431 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 EFNA5P52803 228 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 DMP1Q13316 513 aaPredicted RBP15.29■□□□□ 0.04
UPF1-205ENST00000598209 ARSHQ5FYA8 562 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 LRRC55Q6ZSA7 311 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 MRPL10Q7Z7H8 261 aaKnown RBP15.29■□□□□ 0.04
UPF1-205ENST00000598209 GPBP1Q86WP2 473 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 CDR2LQ86X02 465 aaPredicted RBP15.29■□□□□ 0.04
UPF1-205ENST00000598209 LRRC43Q8N309 656 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 CWH43Q9H720 699 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 LMCD1Q9NZU5 365 aa15.29■□□□□ 0.04
UPF1-205ENST00000598209 MYO7AQ13402 2215 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 A0A1B0GUA9 196 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 TTLL13PA6NNM8 815 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 NCLP19338 710 aaKnown RBP15.28■□□□□ 0.04
UPF1-205ENST00000598209 PRPF4BQ13523 1007 aaKnown RBP15.28■□□□□ 0.04
UPF1-205ENST00000598209 TMEM132AQ24JP5 1023 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 RRAGBQ5VZM2 374 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 ATL3Q6DD88 541 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 SLC27A1Q6PCB7 646 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 GLB1LQ6UWU2 654 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 AGMOQ6ZNB7 445 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 SMG8Q8ND04 991 aaKnown RBP15.28■□□□□ 0.04
UPF1-205ENST00000598209 CNNM3Q8NE01 707 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 LARP4BQ92615 738 aaKnown RBP15.28■□□□□ 0.04
UPF1-205ENST00000598209 P2RX5Q93086 422 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 MRPL9Q9BYD2 267 aaKnown RBP15.28■□□□□ 0.04
UPF1-205ENST00000598209 TRIM6Q9C030 488 aaPredicted RBP15.28■□□□□ 0.04
UPF1-205ENST00000598209 C17orf75Q9HAS0 396 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 KMT5AQ9NQR1 393 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 AAASQ9NRG9 546 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 STK17AQ9UEE5 414 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 ZDHHC9Q9Y397 364 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 IPPQ9Y573 584 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 PCDHB12Q9Y5F1 795 aa15.28■□□□□ 0.04
UPF1-205ENST00000598209 EYSQ5T1H1 3165 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 PHLPP2Q6ZVD8 1323 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 K7ERI5 159 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 ACKR2O00590 384 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 N4BP3O15049 544 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 GRM6O15303 877 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 OFD1O75665 1012 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 NPTXRO95502 500 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 EDN1P05305 212 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 ITGA4P13612 1032 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 PLS3P13797 630 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 LAG3P18627 525 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 DDIT3P35638 169 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 CACNB1Q02641 598 aaPredicted RBP15.27■□□□□ 0.04
UPF1-205ENST00000598209 DNM1Q05193 864 aaKnown RBP15.27■□□□□ 0.04
UPF1-205ENST00000598209 PTPROQ16827 1216 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 NAALADL2Q58DX5 795 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 KLHL23Q8NBE8 558 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 COLGALT1Q8NBJ5 622 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 RSPH1Q8WYR4 309 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 MRPL38Q96DV4 380 aaKnown RBP15.27■□□□□ 0.04
UPF1-205ENST00000598209 REEP2Q9BRK0 252 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 RSAD1Q9HA92 442 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 ALG13Q9NP73 1137 aaKnown RBP15.27■□□□□ 0.04
UPF1-205ENST00000598209 ARHGAP28Q9P2N2 729 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 CFAP45Q9UL16 551 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 ODF2LQ9ULJ1 636 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 INPP5FQ9Y2H2 1132 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms