RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PAN2Q504Q3 1202 aaKnown RBP16.58■□□□□ 0.24
UPF1-202ENST00000594243 SV2BQ7L1I2 683 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 ZNF598Q86UK7 904 aaKnown RBP16.58■□□□□ 0.24
UPF1-202ENST00000594243 GPBP1Q86WP2 473 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 TMEM192Q8IY95 271 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 LRRC15Q8TF66 581 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 CLP1Q92989 425 aaKnown RBP16.58■□□□□ 0.24
UPF1-202ENST00000594243 CPB2Q96IY4 423 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 C17orf80Q9BSJ5 609 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 PANK2Q9BZ23 570 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 TMEM117Q9H0C3 514 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 MTUS1Q9ULD2 1270 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 PCDHA7Q9UN72 937 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 PCDHB2Q9Y5E7 798 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 MYH15Q9Y2K3 1946 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 ACKR2O00590 384 aa16.57■□□□□ 0.24
UPF1-202ENST00000594243 RB1P06400 928 aa16.57■□□□□ 0.24
UPF1-202ENST00000594243 BMPR1AP36894 532 aa16.57■□□□□ 0.24
UPF1-202ENST00000594243 STAT6P42226 847 aa16.57■□□□□ 0.24
UPF1-202ENST00000594243 PRPF4BQ13523 1007 aaKnown RBP16.57■□□□□ 0.24
UPF1-202ENST00000594243 TMEM132AQ24JP5 1023 aa16.57■□□□□ 0.24
UPF1-202ENST00000594243 EPC2Q52LR7 807 aa16.57■□□□□ 0.24
UPF1-202ENST00000594243 UBXN11Q5T124 520 aa16.57■□□□□ 0.24
UPF1-202ENST00000594243 SLC27A1Q6PCB7 646 aa16.57■□□□□ 0.24
UPF1-202ENST00000594243 MRPL10Q7Z7H8 261 aaKnown RBP16.57■□□□□ 0.24
UPF1-202ENST00000594243 FBXO22Q8NEZ5 403 aa16.57■□□□□ 0.24
UPF1-202ENST00000594243 SPIRE2Q8WWL2 714 aa16.57■□□□□ 0.24
UPF1-202ENST00000594243 TRIM6Q9C030 488 aaPredicted RBP16.57■□□□□ 0.24
UPF1-202ENST00000594243 CCDC113Q9H0I3 377 aa16.57■□□□□ 0.24
UPF1-202ENST00000594243 TMEM134Q9H6X4 195 aa16.57■□□□□ 0.24
UPF1-202ENST00000594243 UBN1Q9NPG3 1134 aa16.57■□□□□ 0.24
UPF1-202ENST00000594243 FAM13BQ9NYF5 915 aa16.57■□□□□ 0.24
UPF1-202ENST00000594243 CUL9Q8IWT3 2517 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 NPHP3-ACAD11A0A0J9YXS1 232 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 H0YCG3 227 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 PRKCBP05771 671 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 ATF7P17544 494 aaPredicted RBP16.56■□□□□ 0.24
UPF1-202ENST00000594243 IGFBP4P22692 258 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 GATMP50440 423 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 GIT2Q14161 759 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 AXDND1Q5T1B0 1012 aaPredicted RBP16.56■□□□□ 0.24
UPF1-202ENST00000594243 SHC4Q6S5L8 630 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 SPRED2Q7Z698 418 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 HACE1Q8IYU2 909 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 SPATA32Q96LK8 384 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 CASD1Q96PB1 797 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 REEP2Q9BRK0 252 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 KIFC3Q9BVG8 833 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 PLVAPQ9BX97 442 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 SCAND2PQ9GZW5 306 aaPredicted RBP16.56■□□□□ 0.24
UPF1-202ENST00000594243 CUEDC2Q9H467 287 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 AAASQ9NRG9 546 aa16.56■□□□□ 0.24
UPF1-202ENST00000594243 MRPL42Q9Y6G3 142 aaKnown RBP16.56■□□□□ 0.24
UPF1-202ENST00000594243 CNTNAP2Q9UHC6 1331 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 C5orf67F2Z3F1 127 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 H3BNC9 293 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 RFXAPO00287 272 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 N4BP3O15049 544 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 B4GALT5O43286 388 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 GTPBP6O43824 516 aaPredicted RBP16.55■□□□□ 0.24
UPF1-202ENST00000594243 FAM13AO94988 1023 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 LIG1P18858 919 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 POU3F3P20264 500 aaPredicted RBP16.55■□□□□ 0.24
UPF1-202ENST00000594243 SCP2P22307 547 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 CTNNB1P35222 781 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 ANP32AP39687 249 aaKnown RBP16.55■□□□□ 0.24
UPF1-202ENST00000594243 CACNB1Q02641 598 aaPredicted RBP16.55■□□□□ 0.24
UPF1-202ENST00000594243 NAALADL2Q58DX5 795 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 SPOUT1Q5T280 376 aaKnown RBP16.55■□□□□ 0.24
UPF1-202ENST00000594243 GLB1LQ6UWU2 654 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 MYCT1Q8N699 235 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 PDILTQ8N807 584 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 HELQQ8TDG4 1101 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 PYM1Q9BRP8 204 aaKnown RBP16.55■□□□□ 0.24
UPF1-202ENST00000594243 ADPGKQ9BRR6 497 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 MRPL9Q9BYD2 267 aaKnown RBP16.55■□□□□ 0.24
UPF1-202ENST00000594243 LRRC27Q9C0I9 530 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 PARVGQ9HBI0 331 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 RNF19AQ9NV58 838 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 TYW1Q9NV66 732 aaKnown RBP16.55■□□□□ 0.24
UPF1-202ENST00000594243 LMCD1Q9NZU5 365 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 ARHGAP28Q9P2N2 729 aa16.55■□□□□ 0.24
UPF1-202ENST00000594243 EPOPA6NHQ4 379 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 SLC16A4O15374 487 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 TBCAO75347 108 aaKnown RBP16.54■□□□□ 0.24
UPF1-202ENST00000594243 LINC00271P0C7V0 271 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 ITGA4P13612 1032 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 ABCD1P33897 745 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 STRN3Q13033 797 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 GPM6BQ13491 265 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 ADGRE1Q14246 886 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 LONRF3Q496Y0 759 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 CLLU1OSQ5K130 101 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 ADALQ6DHV7 355 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 APBB1IPQ7Z5R6 666 aaPredicted RBP16.54■□□□□ 0.24
UPF1-202ENST00000594243 LRRC43Q8N309 656 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 IQUBQ8NA54 791 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 SMG8Q8ND04 991 aaKnown RBP16.54■□□□□ 0.24
UPF1-202ENST00000594243 LEO1Q8WVC0 666 aaPredicted RBP16.54■□□□□ 0.24
UPF1-202ENST00000594243 LPPQ93052 612 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms