RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 MTCL1Q9Y4B5 1905 aaKnown RBP13.27□□□□□ -0.28
LIG3-209ENST00000586435 ASAP2O43150 1006 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 B4GALT3O60512 393 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 BRD1O95696 1058 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 XBP1P17861 261 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 HOXA11P31270 313 aaPredicted RBP13.27□□□□□ -0.29
LIG3-209ENST00000586435 STK3Q13188 491 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 EPHA7Q15375 998 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 LONRF3Q496Y0 759 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 ZNF280BQ86YH2 543 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 CNNM3Q8NE01 707 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 TCP11Q8WWU5 503 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 HAS1Q92839 578 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 CEP170P1Q96L14 293 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 LXNQ9BS40 222 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 MINDY3Q9H8M7 445 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 KANSL3Q9P2N6 904 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 WRAP73Q9P2S5 460 aaPredicted RBP13.27□□□□□ -0.29
LIG3-209ENST00000586435 KCNJ14Q9UNX9 436 aa13.27□□□□□ -0.29
LIG3-209ENST00000586435 INPPL1O15357 1258 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 DDHD2O94830 711 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 PDGFBP01127 241 aaPredicted RBP13.26□□□□□ -0.29
LIG3-209ENST00000586435 NCLP19338 710 aaKnown RBP13.26□□□□□ -0.29
LIG3-209ENST00000586435 YWHABP31946 246 aaKnown RBP13.26□□□□□ -0.29
LIG3-209ENST00000586435 SPIRE1Q08AE8 756 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 LAMTOR4Q0VGL1 99 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 SCRN1Q12765 414 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 EMC2Q15006 297 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 UBXN11Q5T124 520 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 OTUD6AQ7L8S5 288 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 GPR149Q86SP6 731 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 FERMT3Q86UX7 667 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 CABP7Q86V35 215 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 C12orf76Q8N812 135 aaPredicted RBP13.26□□□□□ -0.29
LIG3-209ENST00000586435 ZNF579Q8NAF0 562 aaKnown RBP13.26□□□□□ -0.29
LIG3-209ENST00000586435 PRPF31Q8WWY3 499 aaKnown RBP13.26□□□□□ -0.29
LIG3-209ENST00000586435 KLHL5Q96PQ7 755 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 LARP6Q9BRS8 491 aaKnown RBP13.26□□□□□ -0.29
LIG3-209ENST00000586435 EMILIN2Q9BXX0 1053 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 GBP3Q9H0R5 595 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 SLKQ9H2G2 1235 aaPredicted RBP13.26□□□□□ -0.29
LIG3-209ENST00000586435 UBN1Q9NPG3 1134 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 PDRG1Q9NUG6 133 aa13.26□□□□□ -0.29
LIG3-209ENST00000586435 DBR1Q9UK59 544 aaKnown RBP13.26□□□□□ -0.29
LIG3-209ENST00000586435 DOCK8Q8NF50 2099 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 GALR2O43603 387 aaPredicted RBP13.25□□□□□ -0.29
LIG3-209ENST00000586435 ST18O60284 1047 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 CCNT1O60563 726 aaKnown RBP13.25□□□□□ -0.29
LIG3-209ENST00000586435 LILRB3O75022 631 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 ALDH2P05091 517 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 WEE2P0C1S8 567 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 AXLP30530 894 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 CLCN4P51793 760 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 C15orf39Q6ZRI6 1047 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 CCDC149Q6ZUS6 474 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 POTEDQ86YR6 584 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 IFNLR1Q8IU57 520 aaPredicted RBP13.25□□□□□ -0.29
LIG3-209ENST00000586435 SLFN12Q8IYM2 578 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 RNF149Q8NC42 400 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 TMEM143Q96AN5 459 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 CCDC51Q96ER9 411 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 FAM193BQ96PV7 902 aaPredicted RBP13.25□□□□□ -0.29
LIG3-209ENST00000586435 ZSWIM4Q9H7M6 989 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 FAN1Q9Y2M0 1017 aa13.25□□□□□ -0.29
LIG3-209ENST00000586435 NRP1O14786 923 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 PFKFB2O60825 505 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 ERLIN2O94905 339 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 EFEMP2O95967 443 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 SOD2P04179 222 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 ASGR2P07307 311 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 CNPP09543 421 aaKnown RBP13.24□□□□□ -0.29
LIG3-209ENST00000586435 SRGAP2CP0DJJ0 459 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 AFF1P51825 1210 aaKnown RBP13.24□□□□□ -0.29
LIG3-209ENST00000586435 POU5F1BQ06416 359 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 MXD4Q14582 209 aaPredicted RBP13.24□□□□□ -0.29
LIG3-209ENST00000586435 XKR9Q5GH70 373 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 TMC5Q6UXY8 1006 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 PIK3AP1Q6ZUJ8 805 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 RNF168Q8IYW5 571 aaPredicted RBP13.24□□□□□ -0.29
LIG3-209ENST00000586435 SMG8Q8ND04 991 aaKnown RBP13.24□□□□□ -0.29
LIG3-209ENST00000586435 CMASQ8NFW8 434 aaPredicted RBP13.24□□□□□ -0.29
LIG3-209ENST00000586435 ACSF2Q96CM8 615 aaPredicted RBP13.24□□□□□ -0.29
LIG3-209ENST00000586435 MTRQ99707 1265 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 HERC2P3Q9BVR0 1158 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 RHOBTB2Q9BYZ6 727 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 MRPL17Q9NRX2 175 aaKnown RBP13.24□□□□□ -0.29
LIG3-209ENST00000586435 MARCH5Q9NX47 278 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 RGL1Q9NZL6 768 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 SSX2IPQ9Y2D8 614 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 USP34Q70CQ2 3546 aa13.24□□□□□ -0.29
LIG3-209ENST00000586435 ZMYM2Q9UBW7 1377 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 PROB1E7EW31 1015 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 TSPAN1O60635 241 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 LYPLA2O95372 231 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 BAG4O95429 457 aaKnown RBP13.23□□□□□ -0.29
LIG3-209ENST00000586435 URODP06132 367 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 ITGA4P13612 1032 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 KLRC2P26717 231 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 PTENP60484 403 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 DSC1Q08554 894 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms