RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 ACKR2O00590 384 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 TGFB1I1O43294 461 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 B4GALT4O60513 344 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 PRKCBP05771 671 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 PMS1P54277 932 aaKnown RBP11.78□□□□□ -0.52
SS18-213ENST00000579640 FKBP3Q00688 224 aaKnown RBP11.78□□□□□ -0.52
SS18-213ENST00000579640 KCNA1Q09470 495 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 NCAPHQ15003 741 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 SNX17Q15036 470 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 KIZQ2M2Z5 673 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 UVSSAQ2YD98 709 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 ZPBP2Q6X784 338 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 LUZP1Q86V48 1076 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 C12orf56Q8IXR9 622 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 FAM126BQ8IXS8 530 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 TOX2Q96NM4 488 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 MED15Q96RN5 788 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 MRPL4Q9BYD3 311 aaKnown RBP11.78□□□□□ -0.52
SS18-213ENST00000579640 CELF4Q9BZC1 486 aaKnown RBP11.78□□□□□ -0.52
SS18-213ENST00000579640 C11orf49Q9H6J7 331 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 FSD2A1L4K1 749 aa11.77□□□□□ -0.52
SS18-213ENST00000579640 HNRNPDLO14979 420 aaKnown RBP11.77□□□□□ -0.52
SS18-213ENST00000579640 DARSP14868 501 aaKnown RBP11.77□□□□□ -0.52
SS18-213ENST00000579640 LIG4P49917 911 aa11.77□□□□□ -0.52
SS18-213ENST00000579640 RBL2Q08999 1139 aa11.77□□□□□ -0.52
SS18-213ENST00000579640 TMEM62Q0P6H9 643 aa11.77□□□□□ -0.52
SS18-213ENST00000579640 HSP90AA2PQ14568 343 aaPredicted RBP11.77□□□□□ -0.52
SS18-213ENST00000579640 TRIM71Q2Q1W2 868 aaKnown RBP11.77□□□□□ -0.52
SS18-213ENST00000579640 ANKRD33Q7Z3H0 272 aa11.77□□□□□ -0.52
SS18-213ENST00000579640 NECAB2Q7Z6G3 386 aa11.77□□□□□ -0.52
SS18-213ENST00000579640 SLC9A9Q8IVB4 645 aa11.77□□□□□ -0.52
SS18-213ENST00000579640 ZC3H3Q8IXZ2 948 aaKnown RBP11.77□□□□□ -0.52
SS18-213ENST00000579640 CSGALNACT2Q8N6G5 542 aa11.77□□□□□ -0.52
SS18-213ENST00000579640 CAGE1Q8TC20 777 aa11.77□□□□□ -0.52
SS18-213ENST00000579640 BICD1Q96G01 975 aa11.77□□□□□ -0.52
SS18-213ENST00000579640 CEP63Q96MT8 703 aa11.77□□□□□ -0.52
SS18-213ENST00000579640 DUSP9Q99956 384 aaKnown RBP11.77□□□□□ -0.52
SS18-213ENST00000579640 TRPV6Q9H1D0 765 aa11.77□□□□□ -0.52
SS18-213ENST00000579640 THAP9Q9H5L6 903 aa11.77□□□□□ -0.52
SS18-213ENST00000579640 AGPAT3Q9NRZ7 376 aa11.77□□□□□ -0.52
SS18-213ENST00000579640 CDY2AQ9Y6F7 541 aa11.77□□□□□ -0.52
SS18-213ENST00000579640 KIAA0391O15091 583 aaKnown RBP11.76□□□□□ -0.53
SS18-213ENST00000579640 CETN3O15182 167 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 CD4P01730 458 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 NR3C1P04150 777 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 GARTP22102 1010 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 SFPQP23246 707 aaKnown RBP eCLIP11.76□□□□□ -0.53
SS18-213ENST00000579640 EIF4BP23588 611 aaKnown RBP11.76□□□□□ -0.53
SS18-213ENST00000579640 THPOP40225 353 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 MGAT3Q09327 533 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 PRPF4BQ13523 1007 aaKnown RBP11.76□□□□□ -0.53
SS18-213ENST00000579640 FAM26DQ5JW98 314 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 SLFN12LQ6IEE8 588 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 FAM114A1Q8IWE2 563 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 DHX38Q92620 1227 aaKnown RBP11.76□□□□□ -0.53
SS18-213ENST00000579640 WNT8BQ93098 351 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 ZNF668Q96K58 619 aaPredicted RBP11.76□□□□□ -0.53
SS18-213ENST00000579640 PPP1R16BQ96T49 567 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 OSMRQ99650 979 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 GINS2Q9Y248 185 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 DCDC2CA8MYV0 355 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 ERLIN2O94905 339 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 GNA14O95837 355 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 NR2F2P24468 414 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 AXLP30530 894 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 SPAG1Q07617 926 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 NCBP1Q09161 790 aaKnown RBP11.76□□□□□ -0.53
SS18-213ENST00000579640 ADAM9Q13443 819 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 BFSP2Q13515 415 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 DIS3LQ8TF46 1054 aaKnown RBP11.76□□□□□ -0.53
SS18-213ENST00000579640 PAWRQ96IZ0 340 aaKnown RBP11.76□□□□□ -0.53
SS18-213ENST00000579640 ACO2Q99798 780 aaKnown RBP11.76□□□□□ -0.53
SS18-213ENST00000579640 SRRTQ9BXP5 876 aaKnown RBP11.76□□□□□ -0.53
SS18-213ENST00000579640 MINDY3Q9H8M7 445 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 FANCLQ9NW38 375 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 CNTNAP2Q9UHC6 1331 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 STYXL1Q9Y6J8 313 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 SQORQ9Y6N5 450 aa11.76□□□□□ -0.53
SS18-213ENST00000579640 TOM1L1O75674 476 aa11.75□□□□□ -0.53
SS18-213ENST00000579640 ATN1P54259 1190 aaPredicted RBP11.75□□□□□ -0.53
SS18-213ENST00000579640 AMHR2Q16671 573 aa11.75□□□□□ -0.53
SS18-213ENST00000579640 CDKAL1Q5VV42 579 aa11.75□□□□□ -0.53
SS18-213ENST00000579640 ARMCX5Q6P1M9 558 aa11.75□□□□□ -0.53
SS18-213ENST00000579640 LRRC55Q6ZSA7 311 aa11.75□□□□□ -0.53
SS18-213ENST00000579640 TSHZ1Q6ZSZ6 1077 aa11.75□□□□□ -0.53
SS18-213ENST00000579640 FILIP1Q7Z7B0 1213 aa11.75□□□□□ -0.53
SS18-213ENST00000579640 USP38Q8NB14 1042 aa11.75□□□□□ -0.53
SS18-213ENST00000579640 MKNK1Q9BUB5 465 aa11.75□□□□□ -0.53
SS18-213ENST00000579640 TARS2Q9BW92 718 aaKnown RBP11.75□□□□□ -0.53
SS18-213ENST00000579640 CDHR5Q9HBB8 845 aa11.75□□□□□ -0.53
SS18-213ENST00000579640 DMAC2Q9NW81 257 aa11.75□□□□□ -0.53
SS18-213ENST00000579640 MAGEC2Q9UBF1 373 aaPredicted RBP11.75□□□□□ -0.53
SS18-213ENST00000579640 TNFSF13BQ9Y275 285 aa11.75□□□□□ -0.53
SS18-213ENST00000579640 KIAA0100Q14667 2235 aaKnown RBP11.75□□□□□ -0.53
SS18-213ENST00000579640 ANKRD63C9JTQ0 380 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 PITPNM1O00562 1244 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 CLIC2O15247 247 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 SLC16A3O15427 465 aaKnown RBP11.74□□□□□ -0.53
SS18-213ENST00000579640 PQBP1O60828 265 aaKnown RBP11.74□□□□□ -0.53
SS18-213ENST00000579640 CHRNA1P02708 482 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms