RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 LGALS16A8MUM7 142 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 GOLGA6L6A8MZA4 724 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 TISP43B9A030 160 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 TREHO43280 583 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 EXOC3O60645 756 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 AKAP3O75969 853 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 PRKCBP05771 671 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 GARTP22102 1010 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 CASP4P49662 377 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 PPP2R3AQ06190 1150 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 SLC9C1Q4G0N8 1177 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 VWA3BQ502W6 1294 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 SLFN12LQ6IEE8 588 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 SLC39A4Q6P5W5 647 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 RUFY4Q6ZNE9 571 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 SESTD1Q86VW0 696 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 VSTM4Q8IW00 320 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 TRIM59Q8IWR1 403 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 FAM186BQ8IYM0 893 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 ZNF710Q8N1W2 664 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 NME8Q8N427 588 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 XXYLT1Q8NBI6 393 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 SPC24Q8NBT2 197 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 PPP1R13LQ8WUF5 828 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 CBWD1Q9BRT8 395 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 MRPL4Q9BYD3 311 aaKnown RBP14.97□□□□□ -0.01
CCDC40-209ENST00000573474 FAM49AQ9H0Q0 323 aaPredicted RBP14.97□□□□□ -0.01
CCDC40-209ENST00000573474 FZD8Q9H461 694 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 PCIF1Q9H4Z3 704 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 HSPBP1Q9NZL4 362 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 GTF2IRD1Q9UHL9 959 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 STYXL1Q9Y6J8 313 aa14.97□□□□□ -0.01
CCDC40-209ENST00000573474 A0A087WZ62 844 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 PES1O00541 588 aaKnown RBP14.96□□□□□ -0.01
CCDC40-209ENST00000573474 ACKR2O00590 384 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 MAPK13O15264 365 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 TEX33O43247 280 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 ADSSP30520 456 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 GPC3P51654 580 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 ACLYP53396 1101 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 NLRP11P59045 1033 aaKnown RBP14.96□□□□□ -0.01
CCDC40-209ENST00000573474 ZNF200P98182 395 aaPredicted RBP14.96□□□□□ -0.01
CCDC40-209ENST00000573474 UBXN1Q04323 297 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 MBTD1Q05BQ5 628 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 HSP90AA2PQ14568 343 aaPredicted RBP14.96□□□□□ -0.01
CCDC40-209ENST00000573474 FAM187BQ17R55 369 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 MIIPQ5JXC2 388 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 TAF2Q6P1X5 1199 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 ZPBP2Q6X784 338 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 TMC6Q7Z403 805 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 SRGAP1Q7Z6B7 1085 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 CTU1Q7Z7A3 348 aaKnown RBP14.96□□□□□ -0.01
CCDC40-209ENST00000573474 NLRP7Q8WX94 980 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 POMGNT1Q8WZA1 660 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 VTI1AQ96AJ9 217 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 ZNF668Q96K58 619 aaPredicted RBP14.96□□□□□ -0.01
CCDC40-209ENST00000573474 FDXACB1Q9BRP7 624 aaPredicted RBP14.96□□□□□ -0.01
CCDC40-209ENST00000573474 TARS2Q9BW92 718 aaKnown RBP14.96□□□□□ -0.01
CCDC40-209ENST00000573474 UNC93B1Q9H1C4 597 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 IFT122Q9HBG6 1241 aa14.96□□□□□ -0.01
CCDC40-209ENST00000573474 PRMT7Q9NVM4 692 aaPredicted RBP14.96□□□□□ -0.01
CCDC40-209ENST00000573474 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.96□□□□□ -0.01
CCDC40-209ENST00000573474 KAT6AQ92794 2004 aa14.95□□□□□ -0.02
CCDC40-209ENST00000573474 INO80B-WBP1J3KQ70 363 aa14.95□□□□□ -0.02
CCDC40-209ENST00000573474 KIAA0391O15091 583 aaKnown RBP14.95□□□□□ -0.02
CCDC40-209ENST00000573474 PTMAP06454 111 aaKnown RBP14.95□□□□□ -0.02
CCDC40-209ENST00000573474 HSPA8P11142 646 aaKnown RBP14.95□□□□□ -0.02
CCDC40-209ENST00000573474 PBX1P40424 430 aa14.95□□□□□ -0.02
CCDC40-209ENST00000573474 PTPN11Q06124 597 aaPredicted RBP14.95□□□□□ -0.02
CCDC40-209ENST00000573474 FKBP15Q5T1M5 1219 aa14.95□□□□□ -0.02
CCDC40-209ENST00000573474 SPECC1LQ69YQ0 1117 aa14.95□□□□□ -0.02
CCDC40-209ENST00000573474 DNAJB3Q8WWF6 145 aa14.95□□□□□ -0.02
CCDC40-209ENST00000573474 BORCS6Q96GS4 357 aa14.95□□□□□ -0.02
CCDC40-209ENST00000573474 SCLT1Q96NL6 688 aa14.95□□□□□ -0.02
CCDC40-209ENST00000573474 ACO2Q99798 780 aaKnown RBP14.95□□□□□ -0.02
CCDC40-209ENST00000573474 INO80BQ9C086 356 aaPredicted RBP14.95□□□□□ -0.02
CCDC40-209ENST00000573474 ADAMTS10Q9H324 1103 aa14.95□□□□□ -0.02
CCDC40-209ENST00000573474 NDST4Q9H3R1 872 aa14.95□□□□□ -0.02
CCDC40-209ENST00000573474 PAK6Q9NQU5 681 aaPredicted RBP14.95□□□□□ -0.02
CCDC40-209ENST00000573474 IMPACTQ9P2X3 320 aa14.95□□□□□ -0.02
CCDC40-209ENST00000573474 SCN10AQ9Y5Y9 1956 aa14.94□□□□□ -0.02
CCDC40-209ENST00000573474 GRIN2DO15399 1336 aa14.94□□□□□ -0.02
CCDC40-209ENST00000573474 A0A1W2PQC6 194 aa14.94□□□□□ -0.02
CCDC40-209ENST00000573474 GPR32O75388 356 aa14.94□□□□□ -0.02
CCDC40-209ENST00000573474 RPLP2P05387 115 aaKnown RBP14.94□□□□□ -0.02
CCDC40-209ENST00000573474 CCL5P13501 91 aa14.94□□□□□ -0.02
CCDC40-209ENST00000573474 KRT13P13646 458 aa14.94□□□□□ -0.02
CCDC40-209ENST00000573474 PRPF4BQ13523 1007 aaKnown RBP14.94□□□□□ -0.02
CCDC40-209ENST00000573474 ITGA7Q13683 1181 aa14.94□□□□□ -0.02
CCDC40-209ENST00000573474 FAM47CQ5HY64 1035 aa14.94□□□□□ -0.02
CCDC40-209ENST00000573474 GDF6Q6KF10 455 aaPredicted RBP14.94□□□□□ -0.02
CCDC40-209ENST00000573474 PRIMPOLQ96LW4 560 aa14.94□□□□□ -0.02
CCDC40-209ENST00000573474 FBXL18Q96ME1 805 aa14.94□□□□□ -0.02
CCDC40-209ENST00000573474 GLT1D1Q96MS3 346 aa14.94□□□□□ -0.02
CCDC40-209ENST00000573474 PPP1R16BQ96T49 567 aa14.94□□□□□ -0.02
CCDC40-209ENST00000573474 GCOM2Q9BZD3 368 aaPredicted RBP14.94□□□□□ -0.02
CCDC40-209ENST00000573474 MINDY3Q9H8M7 445 aa14.94□□□□□ -0.02
CCDC40-209ENST00000573474 KIAA1586Q9HCI6 787 aa14.94□□□□□ -0.02
CCDC40-209ENST00000573474 EVPLQ92817 2033 aa14.93□□□□□ -0.02
CCDC40-209ENST00000573474 A0A0B4J269 797 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms