RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 TMEM119Q4V9L6 283 aa10.85□□□□□ -0.67
CLN6-209ENST00000569336 TIGD5Q53EQ6 642 aa10.85□□□□□ -0.67
CLN6-209ENST00000569336 SPOUT1Q5T280 376 aaKnown RBP10.85□□□□□ -0.67
CLN6-209ENST00000569336 ATL3Q6DD88 541 aa10.85□□□□□ -0.67
CLN6-209ENST00000569336 GLB1LQ6UWU2 654 aa10.85□□□□□ -0.67
CLN6-209ENST00000569336 PPP4R3CPQ6ZMV5 832 aa10.85□□□□□ -0.67
CLN6-209ENST00000569336 ZNF598Q86UK7 904 aaKnown RBP10.85□□□□□ -0.67
CLN6-209ENST00000569336 KRI1Q8N9T8 703 aaKnown RBP10.85□□□□□ -0.67
CLN6-209ENST00000569336 USP28Q96RU2 1077 aa10.85□□□□□ -0.67
CLN6-209ENST00000569336 TRIM6Q9C030 488 aaPredicted RBP10.85□□□□□ -0.67
CLN6-209ENST00000569336 CCSER1Q9C0I3 900 aa10.85□□□□□ -0.67
CLN6-209ENST00000569336 LMAN2LQ9H0V9 348 aa10.85□□□□□ -0.67
CLN6-209ENST00000569336 STK17AQ9UEE5 414 aa10.85□□□□□ -0.67
CLN6-209ENST00000569336 CCDC39Q9UFE4 941 aa10.85□□□□□ -0.67
CLN6-209ENST00000569336 PCDHB12Q9Y5F1 795 aa10.85□□□□□ -0.67
CLN6-209ENST00000569336 SRPRBQ9Y5M8 271 aaKnown RBP10.85□□□□□ -0.67
CLN6-209ENST00000569336 MRPL42Q9Y6G3 142 aaKnown RBP10.85□□□□□ -0.67
CLN6-209ENST00000569336 RBAK-RBAKDNI3L0D1 243 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 YEATS4O95619 227 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 PLA2G4BP0C869 781 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 ATF7P17544 494 aaPredicted RBP10.84□□□□□ -0.67
CLN6-209ENST00000569336 SCP2P22307 547 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 MARCKSP29966 332 aaPredicted RBP10.84□□□□□ -0.67
CLN6-209ENST00000569336 PPM1AP35813 382 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 BMPR1AP36894 532 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 SLC39A14Q15043 492 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 FAM187BQ17R55 369 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 RINT1Q6NUQ1 792 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 FAM173BQ6P4H8 233 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 SLC27A1Q6PCB7 646 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 APBB1IPQ7Z5R6 666 aaPredicted RBP10.84□□□□□ -0.67
CLN6-209ENST00000569336 SPRED2Q7Z698 418 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 MICALL1Q8N3F8 863 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 SYT2Q8N9I0 419 aaPredicted RBP10.84□□□□□ -0.67
CLN6-209ENST00000569336 URGCPQ8TCY9 931 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 MRPL38Q96DV4 380 aaKnown RBP10.84□□□□□ -0.67
CLN6-209ENST00000569336 PNMA5Q96PV4 448 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 ADPGKQ9BRR6 497 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 UBN1Q9NPG3 1134 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 FBXO2Q9UK22 296 aaPredicted RBP10.84□□□□□ -0.67
CLN6-209ENST00000569336 ODF2LQ9ULJ1 636 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 PCDHB2Q9Y5E7 798 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 MTCH2Q9Y6C9 303 aa10.84□□□□□ -0.67
CLN6-209ENST00000569336 H0YCG3 227 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 RFXAPO00287 272 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 N4BP3O15049 544 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 LPXNO60711 386 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 HIP1RO75146 1068 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 PPP6R2O75170 966 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 PRKCBP05771 671 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 LINC00271P0C7V0 271 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 ARF4P18085 180 aaPredicted RBP10.83□□□□□ -0.68
CLN6-209ENST00000569336 PLCG1P19174 1290 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 NCLP19338 710 aaKnown RBP10.83□□□□□ -0.68
CLN6-209ENST00000569336 HOXA11P31270 313 aaPredicted RBP10.83□□□□□ -0.68
CLN6-209ENST00000569336 GATMP50440 423 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 SMTNP53814 917 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 SLC12A3P55017 1021 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 UBE3AQ05086 875 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 PRPF4BQ13523 1007 aaKnown RBP10.83□□□□□ -0.68
CLN6-209ENST00000569336 KARSQ15046 597 aaKnown RBP10.83□□□□□ -0.68
CLN6-209ENST00000569336 AMHR2Q16671 573 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 CLLU1OSQ5K130 101 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 CCDC73Q6ZRK6 1079 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 C1orf186Q6ZWK4 172 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 KCNK18Q7Z418 384 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 SPRYD3Q8NCJ5 442 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 HELQQ8TDG4 1101 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 KCNG4Q8TDN1 519 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 BSNDQ8WZ55 320 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 LARP4BQ92615 738 aaKnown RBP10.83□□□□□ -0.68
CLN6-209ENST00000569336 PPP2R3CQ969Q6 453 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 PLIN2Q99541 437 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 RUSC1Q9BVN2 902 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 CCDC113Q9H0I3 377 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 CSRNP2Q9H175 543 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 LARSQ9P2J5 1176 aaKnown RBP10.83□□□□□ -0.68
CLN6-209ENST00000569336 CFAP45Q9UL16 551 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 RBM19Q9Y4C8 960 aaKnown RBP10.83□□□□□ -0.68
CLN6-209ENST00000569336 ATP6V1DQ9Y5K8 247 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 TRIOO75962 3097 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 DENND4AQ7Z401 1863 aa10.83□□□□□ -0.68
CLN6-209ENST00000569336 A0A1B0GUA9 196 aa10.82□□□□□ -0.68
CLN6-209ENST00000569336 CCDC169A6NNP5 214 aa10.82□□□□□ -0.68
CLN6-209ENST00000569336 K7ERI5 159 aa10.82□□□□□ -0.68
CLN6-209ENST00000569336 ACKR2O00590 384 aa10.82□□□□□ -0.68
CLN6-209ENST00000569336 SPTLC2O15270 562 aa10.82□□□□□ -0.68
CLN6-209ENST00000569336 TBCAO75347 108 aaKnown RBP10.82□□□□□ -0.68
CLN6-209ENST00000569336 KRT18P05783 430 aaKnown RBP10.82□□□□□ -0.68
CLN6-209ENST00000569336 ITGA4P13612 1032 aa10.82□□□□□ -0.68
CLN6-209ENST00000569336 ABCD1P33897 745 aa10.82□□□□□ -0.68
CLN6-209ENST00000569336 PEX3P56589 373 aa10.82□□□□□ -0.68
CLN6-209ENST00000569336 GRIN1Q05586 938 aa10.82□□□□□ -0.68
CLN6-209ENST00000569336 RNASELQ05823 741 aaKnown RBP10.82□□□□□ -0.68
CLN6-209ENST00000569336 DCAF4L1Q3SXM0 396 aa10.82□□□□□ -0.68
CLN6-209ENST00000569336 MRPL10Q7Z7H8 261 aaKnown RBP10.82□□□□□ -0.68
CLN6-209ENST00000569336 GPBP1Q86WP2 473 aa10.82□□□□□ -0.68
CLN6-209ENST00000569336 THNSL1Q8IYQ7 743 aa10.82□□□□□ -0.68
CLN6-209ENST00000569336 COLGALT1Q8NBJ5 622 aa10.82□□□□□ -0.68
CLN6-209ENST00000569336 LINC00301Q8NCQ3 95 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms