RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 SF3A1Q15459 793 aaKnown RBP15.48■□□□□ 0.07
CLN3-235ENST00000568497 XKR9Q5GH70 373 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 XKR3Q5GH77 459 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 CWF19L1Q69YN2 538 aaKnown RBP15.48■□□□□ 0.07
CLN3-235ENST00000568497 CES5AQ6NT32 575 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 SYCE2Q6PIF2 218 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 CATSPER3Q86XQ3 398 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 LINC01465Q8N7H1 131 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 RDM1Q8NG50 284 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 CEP170P1Q96L14 293 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 HSD17B14Q9BPX1 270 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 POMKQ9H5K3 350 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 AAASQ9NRG9 546 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 TFIP11Q9UBB9 837 aaKnown RBP15.48■□□□□ 0.07
CLN3-235ENST00000568497 TRPV2Q9Y5S1 764 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 SMIM35A0A1B0GVV1 85 aa15.47■□□□□ 0.07
CLN3-235ENST00000568497 FGF18O76093 207 aa15.47■□□□□ 0.07
CLN3-235ENST00000568497 HOXB8P17481 243 aaPredicted RBP15.47■□□□□ 0.07
CLN3-235ENST00000568497 CCT6AP40227 531 aaKnown RBP15.47■□□□□ 0.07
CLN3-235ENST00000568497 TBC1D8BQ0IIM8 1120 aa15.47■□□□□ 0.07
CLN3-235ENST00000568497 PDE12Q6L8Q7 609 aaKnown RBP15.47■□□□□ 0.07
CLN3-235ENST00000568497 KCNK18Q7Z418 384 aa15.47■□□□□ 0.07
CLN3-235ENST00000568497 RTN4RL1Q86UN2 441 aaPredicted RBP15.47■□□□□ 0.07
CLN3-235ENST00000568497 CCDC105Q8IYK2 499 aa15.47■□□□□ 0.07
CLN3-235ENST00000568497 TDRD5Q8NAT2 981 aaKnown RBP15.47■□□□□ 0.07
CLN3-235ENST00000568497 LRRC15Q8TF66 581 aa15.47■□□□□ 0.07
CLN3-235ENST00000568497 FAM167AQ96KS9 214 aa15.47■□□□□ 0.07
CLN3-235ENST00000568497 CLIC6Q96NY7 704 aa15.47■□□□□ 0.07
CLN3-235ENST00000568497 USP28Q96RU2 1077 aa15.47■□□□□ 0.07
CLN3-235ENST00000568497 MMTAG2Q9BU76 263 aaKnown RBP15.47■□□□□ 0.07
CLN3-235ENST00000568497 FTHL17Q9BXU8 183 aa15.47■□□□□ 0.07
CLN3-235ENST00000568497 GPRC5CQ9NQ84 441 aa15.47■□□□□ 0.07
CLN3-235ENST00000568497 ENTPD7Q9NQZ7 604 aa15.47■□□□□ 0.07
CLN3-235ENST00000568497 CYP26B1Q9NR63 512 aa15.47■□□□□ 0.07
CLN3-235ENST00000568497 NOC2LQ9Y3T9 749 aaKnown RBP15.47■□□□□ 0.07
CLN3-235ENST00000568497 KMT2BQ9UMN6 2715 aaPredicted RBP15.47■□□□□ 0.07
CLN3-235ENST00000568497 ZNF292O60281 2723 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 ARID2Q68CP9 1835 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 AOC1P19801 751 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 NLRP11P59045 1033 aaKnown RBP15.46■□□□□ 0.07
CLN3-235ENST00000568497 ATP2C1P98194 919 aaPredicted RBP15.46■□□□□ 0.07
CLN3-235ENST00000568497 TPRNQ4KMQ1 711 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 RILPL1Q5EBL4 403 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 USP49Q70CQ1 688 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 DTWD2Q8NBA8 298 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 SNX29Q8TEQ0 813 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 NECTIN4Q96NY8 510 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 NIFKQ9BYG3 293 aaKnown RBP15.46■□□□□ 0.07
CLN3-235ENST00000568497 CELF4Q9BZC1 486 aaKnown RBP15.46■□□□□ 0.07
CLN3-235ENST00000568497 SEMA4AQ9H3S1 761 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 ZSWIM4Q9H7M6 989 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 XPNPEP1Q9NQW7 623 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 LRWD1Q9UFC0 647 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 LIMD1Q9UGP4 676 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 SQORQ9Y6N5 450 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 R4GN57 208 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 COL1A2P08123 1366 aa15.46■□□□□ 0.07
CLN3-235ENST00000568497 E9PMD0 336 aa15.45■□□□□ 0.06
CLN3-235ENST00000568497 FSCN2O14926 492 aa15.45■□□□□ 0.06
CLN3-235ENST00000568497 PI15O43692 258 aa15.45■□□□□ 0.06
CLN3-235ENST00000568497 MGEA5O60502 916 aa15.45■□□□□ 0.06
CLN3-235ENST00000568497 USO1O60763 962 aaKnown RBP15.45■□□□□ 0.06
CLN3-235ENST00000568497 GPR32O75388 356 aa15.45■□□□□ 0.06
CLN3-235ENST00000568497 C4orf19Q8IY42 314 aa15.45■□□□□ 0.06
CLN3-235ENST00000568497 NLRP4Q96MN2 994 aa15.45■□□□□ 0.06
CLN3-235ENST00000568497 PNMA5Q96PV4 448 aa15.45■□□□□ 0.06
CLN3-235ENST00000568497 TCF25Q9BQ70 676 aa15.45■□□□□ 0.06
CLN3-235ENST00000568497 TMX1Q9H3N1 280 aa15.45■□□□□ 0.06
CLN3-235ENST00000568497 SUCLA2Q9P2R7 463 aaPredicted RBP15.45■□□□□ 0.06
CLN3-235ENST00000568497 FBXL21Q9UKT6 434 aa15.45■□□□□ 0.06
CLN3-235ENST00000568497 KIAA1024Q9UPX6 916 aa15.45■□□□□ 0.06
CLN3-235ENST00000568497 ZDHHC9Q9Y397 364 aa15.45■□□□□ 0.06
CLN3-235ENST00000568497 ACACBO00763 2458 aa15.45■□□□□ 0.06
CLN3-235ENST00000568497 CEP250Q9BV73 2442 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 A0A087WZ62 844 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 TBKBP1A7MCY6 615 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 M0QZ92 97 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 RPLP2P05387 115 aaKnown RBP15.44■□□□□ 0.06
CLN3-235ENST00000568497 PDCP20941 246 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 FXR2P51116 673 aaKnown RBP eCLIP15.44■□□□□ 0.06
CLN3-235ENST00000568497 NFX1Q12986 1120 aaKnown RBP15.44■□□□□ 0.06
CLN3-235ENST00000568497 PAK2Q13177 524 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 EMC2Q15006 297 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 PTPAQ15257 358 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 DTHD1Q6ZMT9 781 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 FAM228AQ86W67 206 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 RHPN2Q8IUC4 686 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 ASAP3Q8TDY4 903 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 CASP10Q92851 521 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 SCLT1Q96NL6 688 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 RTP3Q9BQQ7 232 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 FDXACB1Q9BRP7 624 aaPredicted RBP15.44■□□□□ 0.06
CLN3-235ENST00000568497 ADAMTS10Q9H324 1103 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 DLL3Q9NYJ7 618 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 PADI3Q9ULW8 664 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 USP20Q9Y2K6 914 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 PCDHB7Q9Y5E2 793 aa15.44■□□□□ 0.06
CLN3-235ENST00000568497 STK25O00506 426 aa15.43■□□□□ 0.06
CLN3-235ENST00000568497 MAFO75444 373 aaPredicted RBP15.43■□□□□ 0.06
CLN3-235ENST00000568497 WEE2P0C1S8 567 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms