RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 GPBP1Q86WP2 473 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 ZBTB8OSQ8IWT0 167 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 FIBCD1Q8N539 461 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 SMG8Q8ND04 991 aaKnown RBP10.83□□□□□ -0.68
CLK3-220ENST00000567992 KCNG4Q8TDN1 519 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 ARNTL2Q8WYA1 636 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 LPPQ93052 612 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 CCDC51Q96ER9 411 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 CPB2Q96IY4 423 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 PRIMPOLQ96LW4 560 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 DRC1Q96MC2 740 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 CASD1Q96PB1 797 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 TGS1Q96RS0 853 aaKnown RBP10.83□□□□□ -0.68
CLK3-220ENST00000567992 REEP2Q9BRK0 252 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 EIF2AQ9BY44 585 aaKnown RBP10.83□□□□□ -0.68
CLK3-220ENST00000567992 C2orf40Q9H1Z8 148 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 PRMT7Q9NVM4 692 aaPredicted RBP10.83□□□□□ -0.68
CLK3-220ENST00000567992 ARHGAP28Q9P2N2 729 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 STK17AQ9UEE5 414 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 MTUS1Q9ULD2 1270 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 LRFN2Q9ULH4 789 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 PCDHA7Q9UN72 937 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 STXBP5LQ9Y2K9 1186 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 PHLPP2Q6ZVD8 1323 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 A0A1B0GUA9 196 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 TBKBP1A7MCY6 615 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 SFI1A8K8P3 1242 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 EOMESO95936 686 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 PRKCBP05771 671 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 PLS3P13797 630 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 AXLP30530 894 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 TXLNAP40222 546 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 RAB27AP51159 221 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 PEX3P56589 373 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 GIT2Q14161 759 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 DHX8Q14562 1220 aaKnown RBP10.82□□□□□ -0.68
CLK3-220ENST00000567992 EPC2Q52LR7 807 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 NOTUMQ6P988 496 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 LRRC55Q6ZSA7 311 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 CDR2LQ86X02 465 aaPredicted RBP10.82□□□□□ -0.68
CLK3-220ENST00000567992 TMEM192Q8IY95 271 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 RASSF8Q8NHQ8 419 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 DEPTORQ8TB45 409 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 HELQQ8TDG4 1101 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 GDPD5Q8WTR4 605 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 LEO1Q8WVC0 666 aaPredicted RBP10.82□□□□□ -0.68
CLK3-220ENST00000567992 SPIRE2Q8WWL2 714 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 IFT74Q96LB3 600 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 FIZ1Q96SL8 496 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 TMEM117Q9H0C3 514 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 PDZD7Q9H5P4 517 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 C17orf75Q9HAS0 396 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 CCDC39Q9UFE4 941 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 CFAP45Q9UL16 551 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 ODF2LQ9ULJ1 636 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 USP20Q9Y2K6 914 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 PCDHB2Q9Y5E7 798 aa10.82□□□□□ -0.68
CLK3-220ENST00000567992 MYMKA6NI61 221 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 C5orf67F2Z3F1 127 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 ACKR2O00590 384 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 HOXA2O43364 376 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 FOSL2P15408 326 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 NCLP19338 710 aaKnown RBP10.81□□□□□ -0.68
CLK3-220ENST00000567992 POU3F3P20264 500 aaPredicted RBP10.81□□□□□ -0.68
CLK3-220ENST00000567992 EFNA5P52803 228 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 NCKAP1LP55160 1127 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 KRT85P78386 507 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 DMP1Q13316 513 aaPredicted RBP10.81□□□□□ -0.68
CLK3-220ENST00000567992 MAPK6Q16659 721 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 NT5DC1Q5TFE4 455 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 RRAGBQ5VZM2 374 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 RESP18Q5W5W9 173 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 EEF1DP3Q658K8 133 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 AGMOQ6ZNB7 445 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 CCDC73Q6ZRK6 1079 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 PDILTQ8N807 584 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 RNF169Q8NCN4 708 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 TMEM161BQ8NDZ6 487 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 KCNN1Q92952 543 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 SAMD11Q96NU1 681 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 NTPCRQ9BSD7 190 aaKnown RBP10.81□□□□□ -0.68
CLK3-220ENST00000567992 PANK2Q9BZ23 570 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 CWH43Q9H720 699 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 IPPQ9Y573 584 aa10.81□□□□□ -0.68
CLK3-220ENST00000567992 PRRC2BQ5JSZ5 2229 aaKnown RBP10.81□□□□□ -0.68
CLK3-220ENST00000567992 CCDC169A6NNP5 214 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 H3BNC9 293 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 ABLIM1O14639 778 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 INPPL1O15357 1258 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 SLC16A4O15374 487 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 B4GALT3O60512 393 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 OFD1O75665 1012 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 MAPTP10636 758 aaKnown RBP10.8□□□□□ -0.68
CLK3-220ENST00000567992 SKIP12755 728 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 CTNNB1P35222 781 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 BMPR1AP36894 532 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 STAT6P42226 847 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 ME1P48163 572 aa10.8□□□□□ -0.68
CLK3-220ENST00000567992 AFF1P51825 1210 aaKnown RBP10.8□□□□□ -0.68
CLK3-220ENST00000567992 PRPF4BQ13523 1007 aaKnown RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms