RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CCT6AP40227 531 aaKnown RBP23.01■■□□□ 1.27
CLN3-219ENST00000565778 FXR2P51116 673 aaKnown RBP eCLIP23.01■■□□□ 1.27
CLN3-219ENST00000565778 PDIA5Q14554 519 aa23.01■■□□□ 1.27
CLN3-219ENST00000565778 HAUS3Q68CZ6 603 aa23.01■■□□□ 1.27
CLN3-219ENST00000565778 NOTUMQ6P988 496 aa23.01■■□□□ 1.27
CLN3-219ENST00000565778 AGMOQ6ZNB7 445 aa23.01■■□□□ 1.27
CLN3-219ENST00000565778 IFNLR1Q8IU57 520 aaPredicted RBP23.01■■□□□ 1.27
CLN3-219ENST00000565778 CNNM3Q8NE01 707 aa23.01■■□□□ 1.27
CLN3-219ENST00000565778 MCPH1Q8NEM0 835 aa23.01■■□□□ 1.27
CLN3-219ENST00000565778 TMEM169Q96HH4 297 aa23.01■■□□□ 1.27
CLN3-219ENST00000565778 CDCA3Q99618 268 aaPredicted RBP23.01■■□□□ 1.27
CLN3-219ENST00000565778 NRDE2Q9H7Z3 1164 aa23.01■■□□□ 1.27
CLN3-219ENST00000565778 GPRC5CQ9NQ84 441 aa23.01■■□□□ 1.27
CLN3-219ENST00000565778 TBC1D13Q9NVG8 400 aa23.01■■□□□ 1.27
CLN3-219ENST00000565778 PLXNA4Q9HCM2 1894 aa23■■□□□ 1.27
CLN3-219ENST00000565778 H3BQV1 296 aa23■■□□□ 1.27
CLN3-219ENST00000565778 ITGA4P13612 1032 aa23■■□□□ 1.27
CLN3-219ENST00000565778 GJB2P29033 226 aa23■■□□□ 1.27
CLN3-219ENST00000565778 BMS1Q14692 1282 aaKnown RBP23■■□□□ 1.27
CLN3-219ENST00000565778 DUSP6Q16828 381 aa23■■□□□ 1.27
CLN3-219ENST00000565778 MSLNLQ96KJ4 702 aa23■■□□□ 1.27
CLN3-219ENST00000565778 TBC1D32Q96NH3 1257 aa23■■□□□ 1.27
CLN3-219ENST00000565778 RAB34Q9BZG1 259 aa23■■□□□ 1.27
CLN3-219ENST00000565778 RSAD1Q9HA92 442 aa23■■□□□ 1.27
CLN3-219ENST00000565778 UBN1Q9NPG3 1134 aa23■■□□□ 1.27
CLN3-219ENST00000565778 CLEC1BQ9P126 229 aa23■■□□□ 1.27
CLN3-219ENST00000565778 KANSL3Q9P2N6 904 aa23■■□□□ 1.27
CLN3-219ENST00000565778 BARX2Q9UMQ3 279 aaPredicted RBP23■■□□□ 1.27
CLN3-219ENST00000565778 FSD2A1L4K1 749 aa22.99■■□□□ 1.27
CLN3-219ENST00000565778 CARNS1A5YM72 827 aa22.99■■□□□ 1.27
CLN3-219ENST00000565778 LRRIQ4A6NIV6 560 aa22.99■■□□□ 1.27
CLN3-219ENST00000565778 NCLP19338 710 aaKnown RBP22.99■■□□□ 1.27
CLN3-219ENST00000565778 MUTP22033 750 aa22.99■■□□□ 1.27
CLN3-219ENST00000565778 CA8P35219 290 aa22.99■■□□□ 1.27
CLN3-219ENST00000565778 MBTD1Q05BQ5 628 aa22.99■■□□□ 1.27
CLN3-219ENST00000565778 SMAD4Q13485 552 aaKnown RBP22.99■■□□□ 1.27
CLN3-219ENST00000565778 PADI6Q6TGC4 694 aa22.99■■□□□ 1.27
CLN3-219ENST00000565778 FAM193BQ96PV7 902 aaPredicted RBP22.99■■□□□ 1.27
CLN3-219ENST00000565778 EIF2AQ9BY44 585 aaKnown RBP22.99■■□□□ 1.27
CLN3-219ENST00000565778 NFKBIZQ9BYH8 718 aa22.99■■□□□ 1.27
CLN3-219ENST00000565778 CSRNP2Q9H175 543 aa22.99■■□□□ 1.27
CLN3-219ENST00000565778 EPHX3Q9H6B9 360 aa22.99■■□□□ 1.27
CLN3-219ENST00000565778 PRKAG3Q9UGI9 489 aa22.99■■□□□ 1.27
CLN3-219ENST00000565778 STK24Q9Y6E0 443 aa22.99■■□□□ 1.27
CLN3-219ENST00000565778 MUC3AQ02505 3323 aa22.99■■□□□ 1.27
CLN3-219ENST00000565778 HIDE1A8MVS5 230 aa22.98■■□□□ 1.27
CLN3-219ENST00000565778 CXCL14O95715 111 aa22.98■■□□□ 1.27
CLN3-219ENST00000565778 GLP2RO95838 553 aa22.98■■□□□ 1.27
CLN3-219ENST00000565778 ALDH2P05091 517 aa22.98■■□□□ 1.27
CLN3-219ENST00000565778 GALTP07902 379 aa22.98■■□□□ 1.27
CLN3-219ENST00000565778 CYP11B2P19099 503 aa22.98■■□□□ 1.27
CLN3-219ENST00000565778 SMAD2Q15796 467 aaKnown RBP22.98■■□□□ 1.27
CLN3-219ENST00000565778 ZNF280BQ86YH2 543 aa22.98■■□□□ 1.27
CLN3-219ENST00000565778 MRPL43Q8N983 215 aaKnown RBP22.98■■□□□ 1.27
CLN3-219ENST00000565778 SMG8Q8ND04 991 aaKnown RBP22.98■■□□□ 1.27
CLN3-219ENST00000565778 KHSRPQ92945 711 aaKnown RBP eCLIP22.98■■□□□ 1.27
CLN3-219ENST00000565778 CCDC51Q96ER9 411 aa22.98■■□□□ 1.27
CLN3-219ENST00000565778 C1QTNF1Q9BXJ1 281 aa22.98■■□□□ 1.27
CLN3-219ENST00000565778 TRIM6Q9C030 488 aaPredicted RBP22.98■■□□□ 1.27
CLN3-219ENST00000565778 DNAJB4Q9UDY4 337 aa22.98■■□□□ 1.27
CLN3-219ENST00000565778 KIAA1024Q9UPX6 916 aa22.98■■□□□ 1.27
CLN3-219ENST00000565778 SMC3Q9UQE7 1217 aa22.98■■□□□ 1.27
CLN3-219ENST00000565778 IPPQ9Y573 584 aa22.98■■□□□ 1.27
CLN3-219ENST00000565778 CNTNAP2Q9UHC6 1331 aa22.98■■□□□ 1.27
CLN3-219ENST00000565778 ATG2AQ2TAZ0 1938 aa22.98■■□□□ 1.27
CLN3-219ENST00000565778 LAD1O00515 517 aa22.97■■□□□ 1.27
CLN3-219ENST00000565778 POMCP01189 267 aa22.97■■□□□ 1.27
CLN3-219ENST00000565778 ARF4P18085 180 aaPredicted RBP22.97■■□□□ 1.27
CLN3-219ENST00000565778 AFF1P51825 1210 aaKnown RBP22.97■■□□□ 1.27
CLN3-219ENST00000565778 RBM10P98175 930 aaKnown RBP22.97■■□□□ 1.27
CLN3-219ENST00000565778 SMC1AQ14683 1233 aaKnown RBP22.97■■□□□ 1.27
CLN3-219ENST00000565778 ECM1Q16610 540 aa22.97■■□□□ 1.27
CLN3-219ENST00000565778 AMHR2Q16671 573 aa22.97■■□□□ 1.27
CLN3-219ENST00000565778 DTHD1Q6ZMT9 781 aa22.97■■□□□ 1.27
CLN3-219ENST00000565778 ADHFE1Q8IWW8 467 aa22.97■■□□□ 1.27
CLN3-219ENST00000565778 VPS52Q8N1B4 723 aa22.97■■□□□ 1.27
CLN3-219ENST00000565778 TMEM87AQ8NBN3 555 aa22.97■■□□□ 1.27
CLN3-219ENST00000565778 IGSF21Q96ID5 467 aa22.97■■□□□ 1.27
CLN3-219ENST00000565778 HES2Q9Y543 173 aa22.97■■□□□ 1.27
CLN3-219ENST00000565778 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.97■■□□□ 1.27
CLN3-219ENST00000565778 B4GALT5O43286 388 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 DDHD2O94830 711 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 EYA4O95677 639 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 SRGAP2BP0DMP2 458 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 SLC11A1P49279 550 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 COASYQ13057 564 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 RILPL1Q5EBL4 403 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 LLGL2Q6P1M3 1020 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 ZBTB8OSQ8IWT0 167 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 IGSF22Q8N9C0 903 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 SNX29Q8TEQ0 813 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 APOL6Q9BWW8 343 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 RNF39Q9H2S5 420 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 POLD4Q9HCU8 107 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.96■■□□□ 1.27
CLN3-219ENST00000565778 DDX19AQ9NUU7 478 aaKnown RBP22.96■■□□□ 1.27
CLN3-219ENST00000565778 FAN1Q9Y2M0 1017 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 ARID2Q68CP9 1835 aa22.96■■□□□ 1.27
CLN3-219ENST00000565778 BDP1A6H8Y1 2624 aa22.95■■□□□ 1.27
CLN3-219ENST00000565778 ZP2Q05996 745 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms