RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 GPRC5CQ9NQ84 441 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 PRKAG3Q9UGI9 489 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 PCDHB6Q9Y5E3 794 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 NT5C1B-RDH14C9J2C7 533 aa16.53■□□□□ 0.24
CLN3-213ENST00000565047 DDHD2O94830 711 aa16.53■□□□□ 0.24
CLN3-213ENST00000565047 GALTP07902 379 aa16.53■□□□□ 0.24
CLN3-213ENST00000565047 MUTP22033 750 aa16.53■□□□□ 0.24
CLN3-213ENST00000565047 AXLP30530 894 aa16.53■□□□□ 0.24
CLN3-213ENST00000565047 SMAD4Q13485 552 aaKnown RBP16.53■□□□□ 0.24
CLN3-213ENST00000565047 PDIA5Q14554 519 aa16.53■□□□□ 0.24
CLN3-213ENST00000565047 CLUL1Q15846 466 aa16.53■□□□□ 0.24
CLN3-213ENST00000565047 GLB1LQ6UWU2 654 aa16.53■□□□□ 0.24
CLN3-213ENST00000565047 EP400NLQ6ZTU2 488 aa16.53■□□□□ 0.24
CLN3-213ENST00000565047 PPP2R3CQ969Q6 453 aa16.53■□□□□ 0.24
CLN3-213ENST00000565047 TCF25Q9BQ70 676 aa16.53■□□□□ 0.24
CLN3-213ENST00000565047 VN1R3Q9BXE9 311 aa16.53■□□□□ 0.24
CLN3-213ENST00000565047 EIF2AQ9BY44 585 aaKnown RBP16.53■□□□□ 0.24
CLN3-213ENST00000565047 POLR3FQ9H1D9 316 aaPredicted RBP16.53■□□□□ 0.24
CLN3-213ENST00000565047 TLE6Q9H808 572 aa16.53■□□□□ 0.24
CLN3-213ENST00000565047 NGRNQ9NPE2 291 aaKnown RBP16.53■□□□□ 0.24
CLN3-213ENST00000565047 DNAJB4Q9UDY4 337 aa16.53■□□□□ 0.24
CLN3-213ENST00000565047 PUF60Q9UHX1 559 aaKnown RBP16.53■□□□□ 0.24
CLN3-213ENST00000565047 CD207Q9UJ71 328 aa16.53■□□□□ 0.24
CLN3-213ENST00000565047 C2orf71A6NGG8 1288 aa16.52■□□□□ 0.24
CLN3-213ENST00000565047 ST18O60284 1047 aa16.52■□□□□ 0.24
CLN3-213ENST00000565047 USO1O60763 962 aaKnown RBP16.52■□□□□ 0.24
CLN3-213ENST00000565047 ARF4P18085 180 aaPredicted RBP16.52■□□□□ 0.24
CLN3-213ENST00000565047 NDUFV1P49821 464 aa16.52■□□□□ 0.24
CLN3-213ENST00000565047 KRT17Q04695 432 aa16.52■□□□□ 0.24
CLN3-213ENST00000565047 PTGDRQ13258 359 aa16.52■□□□□ 0.24
CLN3-213ENST00000565047 TFDP1Q14186 410 aa16.52■□□□□ 0.24
CLN3-213ENST00000565047 PLPP4Q5VZY2 271 aa16.52■□□□□ 0.24
CLN3-213ENST00000565047 CDCA2Q69YH5 1023 aaPredicted RBP16.52■□□□□ 0.24
CLN3-213ENST00000565047 ADHFE1Q8IWW8 467 aa16.52■□□□□ 0.24
CLN3-213ENST00000565047 MRPL43Q8N983 215 aaKnown RBP16.52■□□□□ 0.24
CLN3-213ENST00000565047 MICAL1Q8TDZ2 1067 aa16.52■□□□□ 0.24
CLN3-213ENST00000565047 PGBD4Q96DM1 585 aa16.52■□□□□ 0.24
CLN3-213ENST00000565047 IGSF21Q96ID5 467 aa16.52■□□□□ 0.24
CLN3-213ENST00000565047 CPB2Q96IY4 423 aa16.52■□□□□ 0.24
CLN3-213ENST00000565047 RNF39Q9H2S5 420 aa16.52■□□□□ 0.24
CLN3-213ENST00000565047 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.52■□□□□ 0.24
CLN3-213ENST00000565047 BARX2Q9UMQ3 279 aaPredicted RBP16.52■□□□□ 0.24
CLN3-213ENST00000565047 A0A1B0GUA9 196 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 B4GALT5O43286 388 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 EFEMP2O95967 443 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 CYP11B2P19099 503 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 SLC11A1P49279 550 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 ALDH7A1P49419 539 aaKnown RBP16.51■□□□□ 0.23
CLN3-213ENST00000565047 PPP4R3CPQ6ZMV5 832 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 GSTCDQ8NEC7 633 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 BSNDQ8WZ55 320 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 SUSD6Q92537 303 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 CCDC51Q96ER9 411 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 MMTAG2Q9BU76 263 aaKnown RBP16.51■□□□□ 0.23
CLN3-213ENST00000565047 CSRNP2Q9H175 543 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 S1PR5Q9H228 398 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 FZD8Q9H461 694 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 RSAD1Q9HA92 442 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 MIOSQ9NXC5 875 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 FAM50BQ9Y247 325 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 IPPQ9Y573 584 aa16.51■□□□□ 0.23
CLN3-213ENST00000565047 CNTNAP2Q9UHC6 1331 aa16.5■□□□□ 0.23
CLN3-213ENST00000565047 TTLL13PA6NNM8 815 aa16.5■□□□□ 0.23
CLN3-213ENST00000565047 INO80B-WBP1J3KQ70 363 aa16.5■□□□□ 0.23
CLN3-213ENST00000565047 FAM187BQ17R55 369 aa16.5■□□□□ 0.23
CLN3-213ENST00000565047 NOTUMQ6P988 496 aa16.5■□□□□ 0.23
CLN3-213ENST00000565047 PADI6Q6TGC4 694 aa16.5■□□□□ 0.23
CLN3-213ENST00000565047 DDX53Q86TM3 631 aaKnown RBP16.5■□□□□ 0.23
CLN3-213ENST00000565047 CNNM3Q8NE01 707 aa16.5■□□□□ 0.23
CLN3-213ENST00000565047 MCPH1Q8NEM0 835 aa16.5■□□□□ 0.23
CLN3-213ENST00000565047 ERMNQ8TAM6 284 aa16.5■□□□□ 0.23
CLN3-213ENST00000565047 C1QTNF1Q9BXJ1 281 aa16.5■□□□□ 0.23
CLN3-213ENST00000565047 ZBP1Q9H171 429 aa16.5■□□□□ 0.23
CLN3-213ENST00000565047 NOL7Q9UMY1 257 aaKnown RBP16.5■□□□□ 0.23
CLN3-213ENST00000565047 INPP5FQ9Y2H2 1132 aa16.5■□□□□ 0.23
CLN3-213ENST00000565047 HES2Q9Y543 173 aa16.5■□□□□ 0.23
CLN3-213ENST00000565047 IRAK3Q9Y616 596 aa16.5■□□□□ 0.23
CLN3-213ENST00000565047 LAD1O00515 517 aa16.49■□□□□ 0.23
CLN3-213ENST00000565047 ZC3H11AO75152 810 aaKnown RBP eCLIP16.49■□□□□ 0.23
CLN3-213ENST00000565047 ERLIN2O94905 339 aa16.49■□□□□ 0.23
CLN3-213ENST00000565047 EDN1P05305 212 aa16.49■□□□□ 0.23
CLN3-213ENST00000565047 GJB2P29033 226 aa16.49■□□□□ 0.23
CLN3-213ENST00000565047 PRPHP41219 470 aa16.49■□□□□ 0.23
CLN3-213ENST00000565047 DSC1Q08554 894 aa16.49■□□□□ 0.23
CLN3-213ENST00000565047 SYCE2Q6PIF2 218 aa16.49■□□□□ 0.23
CLN3-213ENST00000565047 MAEAQ7L5Y9 396 aa16.49■□□□□ 0.23
CLN3-213ENST00000565047 TMC7Q7Z402 723 aa16.49■□□□□ 0.23
CLN3-213ENST00000565047 CCDC113Q9H0I3 377 aa16.49■□□□□ 0.23
CLN3-213ENST00000565047 UBN1Q9NPG3 1134 aa16.49■□□□□ 0.23
CLN3-213ENST00000565047 ENTPD7Q9NQZ7 604 aa16.49■□□□□ 0.23
CLN3-213ENST00000565047 LRWD1Q9UFC0 647 aa16.49■□□□□ 0.23
CLN3-213ENST00000565047 FSD2A1L4K1 749 aa16.48■□□□□ 0.23
CLN3-213ENST00000565047 CARNS1A5YM72 827 aa16.48■□□□□ 0.23
CLN3-213ENST00000565047 ARL5CA6NH57 179 aa16.48■□□□□ 0.23
CLN3-213ENST00000565047 PP2D1A8MPX8 630 aa16.48■□□□□ 0.23
CLN3-213ENST00000565047 GPR37L1O60883 481 aa16.48■□□□□ 0.23
CLN3-213ENST00000565047 LILRB3O75022 631 aa16.48■□□□□ 0.23
CLN3-213ENST00000565047 CLASP2O75122 1294 aaKnown RBP16.48■□□□□ 0.23
CLN3-213ENST00000565047 CTSAP10619 480 aa16.48■□□□□ 0.23
CLN3-213ENST00000565047 MCM2P49736 904 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms