RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 KCNQ1P51787 676 aa14.81□□□□□ -0.04
CLK3-216ENST00000564468 EFNA5P52803 228 aa14.81□□□□□ -0.04
CLK3-216ENST00000564468 UBE3AQ05086 875 aa14.81□□□□□ -0.04
CLK3-216ENST00000564468 CDCA2Q69YH5 1023 aaPredicted RBP14.81□□□□□ -0.04
CLK3-216ENST00000564468 GLB1LQ6UWU2 654 aa14.81□□□□□ -0.04
CLK3-216ENST00000564468 MRPL10Q7Z7H8 261 aaKnown RBP14.81□□□□□ -0.04
CLK3-216ENST00000564468 HACE1Q8IYU2 909 aa14.81□□□□□ -0.04
CLK3-216ENST00000564468 HELQQ8TDG4 1101 aa14.81□□□□□ -0.04
CLK3-216ENST00000564468 HLA-CQ95604 372 aa14.81□□□□□ -0.04
CLK3-216ENST00000564468 DRC1Q96MC2 740 aa14.81□□□□□ -0.04
CLK3-216ENST00000564468 TRIM6Q9C030 488 aaPredicted RBP14.81□□□□□ -0.04
CLK3-216ENST00000564468 C17orf75Q9HAS0 396 aa14.81□□□□□ -0.04
CLK3-216ENST00000564468 TYW1Q9NV66 732 aaKnown RBP14.81□□□□□ -0.04
CLK3-216ENST00000564468 KCND2Q9NZV8 630 aa14.81□□□□□ -0.04
CLK3-216ENST00000564468 PLAGL2Q9UPG8 496 aa14.81□□□□□ -0.04
CLK3-216ENST00000564468 PCDHB2Q9Y5E7 798 aa14.81□□□□□ -0.04
CLK3-216ENST00000564468 PHLPP2Q6ZVD8 1323 aa14.81□□□□□ -0.04
CLK3-216ENST00000564468 CNTNAP2Q9UHC6 1331 aa14.81□□□□□ -0.04
CLK3-216ENST00000564468 REV3LO60673 3130 aa14.81□□□□□ -0.04
CLK3-216ENST00000564468 TSPAN1O60635 241 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 ATF7P17544 494 aaPredicted RBP14.8□□□□□ -0.04
CLK3-216ENST00000564468 PPM1AP35813 382 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 MAPK6Q16659 721 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 FAM187BQ17R55 369 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 CLLU1OSQ5K130 101 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 RINT1Q6NUQ1 792 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 PPP4R3CPQ6ZMV5 832 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 SYT2Q8N9I0 419 aaPredicted RBP14.8□□□□□ -0.04
CLK3-216ENST00000564468 KLHL23Q8NBE8 558 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 COLGALT1Q8NBJ5 622 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 RASSF8Q8NHQ8 419 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 URGCPQ8TCY9 931 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 PPP2R3CQ969Q6 453 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 ZNF396Q96N95 335 aaPredicted RBP14.8□□□□□ -0.04
CLK3-216ENST00000564468 PNMA5Q96PV4 448 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 LRFN3Q9BTN0 628 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 CSRNP2Q9H175 543 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 CWH43Q9H720 699 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 RNF19AQ9NV58 838 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 KANSL3Q9P2N6 904 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 CLIC4Q9Y696 253 aa14.8□□□□□ -0.04
CLK3-216ENST00000564468 MORC2Q9Y6X9 1032 aaPredicted RBP14.8□□□□□ -0.04
CLK3-216ENST00000564468 SSBP05455 408 aaKnown RBP eCLIP14.79□□□□□ -0.04
CLK3-216ENST00000564468 ITGA4P13612 1032 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 ARF4P18085 180 aaPredicted RBP14.79□□□□□ -0.04
CLK3-216ENST00000564468 NCLP19338 710 aaKnown RBP14.79□□□□□ -0.04
CLK3-216ENST00000564468 GUCY2CP25092 1073 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 TXLNAP40222 546 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 DMP1Q13316 513 aaPredicted RBP14.79□□□□□ -0.04
CLK3-216ENST00000564468 PTPAQ15257 358 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 AMHR2Q16671 573 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 TMEM132AQ24JP5 1023 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 TMEM119Q4V9L6 283 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 NOMO2Q5JPE7 1267 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 SLC27A1Q6PCB7 646 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 C1orf186Q6ZWK4 172 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 THNSL1Q8IYQ7 743 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 ZNF558Q96NG5 402 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 CCSER1Q9C0I3 900 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 FZD8Q9H461 694 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 NSUN3Q9H649 340 aaKnown RBP14.79□□□□□ -0.04
CLK3-216ENST00000564468 RSAD1Q9HA92 442 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 CCDC39Q9UFE4 941 aa14.79□□□□□ -0.04
CLK3-216ENST00000564468 PUF60Q9UHX1 559 aaKnown RBP14.79□□□□□ -0.04
CLK3-216ENST00000564468 SRPRBQ9Y5M8 271 aaKnown RBP14.79□□□□□ -0.04
CLK3-216ENST00000564468 TRIP11Q15643 1979 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 A0A1B0GUA9 196 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 K7ERI5 159 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 N4BP3O15049 544 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 GRM6O15303 877 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 NCK2O43639 380 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 HIP1RO75146 1068 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 ITGB1P05556 798 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 PRKCBP05771 671 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 PLA2G4BP0C869 781 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 ALDH7A1P49419 539 aaKnown RBP14.78□□□□□ -0.04
CLK3-216ENST00000564468 KRT17Q04695 432 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 RNASELQ05823 741 aaKnown RBP14.78□□□□□ -0.04
CLK3-216ENST00000564468 PRPF4BQ13523 1007 aaKnown RBP14.78□□□□□ -0.04
CLK3-216ENST00000564468 SLC39A14Q15043 492 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 UBXN11Q5T124 520 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 PDE12Q6L8Q7 609 aaKnown RBP14.78□□□□□ -0.04
CLK3-216ENST00000564468 KCNT2Q6UVM3 1135 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 KCNK18Q7Z418 384 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 APBB1IPQ7Z5R6 666 aaPredicted RBP14.78□□□□□ -0.04
CLK3-216ENST00000564468 SPPL3Q8TCT6 385 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 POF1BQ8WVV4 589 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 LPPQ93052 612 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 CPB2Q96IY4 423 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 PLIN2Q99541 437 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 ADPGKQ9BRR6 497 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 EPHX3Q9H6B9 360 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 ALG13Q9NP73 1137 aaKnown RBP14.78□□□□□ -0.04
CLK3-216ENST00000564468 LZTS1Q9Y250 596 aa14.78□□□□□ -0.04
CLK3-216ENST00000564468 RBM19Q9Y4C8 960 aaKnown RBP14.78□□□□□ -0.04
CLK3-216ENST00000564468 CITO14578 2027 aa14.77□□□□□ -0.04
CLK3-216ENST00000564468 CCDC169A6NNP5 214 aa14.77□□□□□ -0.05
CLK3-216ENST00000564468 ACKR2O00590 384 aa14.77□□□□□ -0.05
CLK3-216ENST00000564468 GPR37L1O60883 481 aa14.77□□□□□ -0.05
CLK3-216ENST00000564468 OFD1O75665 1012 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms