RNA–Protein interactions for RNA: ENST00000564260.1

RNF40-206, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 768 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-206ENST00000564260 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.39■□□□□ 0.53
RNF40-206ENST00000564260 RTN4RL1Q86UN2 441 aaPredicted RBP18.39■□□□□ 0.53
RNF40-206ENST00000564260 FAM178BQ8IXR5 827 aa18.39■□□□□ 0.53
RNF40-206ENST00000564260 CCDC65Q8IXS2 484 aa18.39■□□□□ 0.53
RNF40-206ENST00000564260 HACE1Q8IYU2 909 aa18.39■□□□□ 0.53
RNF40-206ENST00000564260 TMEM161BQ8NDZ6 487 aa18.39■□□□□ 0.53
RNF40-206ENST00000564260 DNAJC19Q96DA6 116 aa18.39■□□□□ 0.53
RNF40-206ENST00000564260 ZNF668Q96K58 619 aaPredicted RBP18.39■□□□□ 0.53
RNF40-206ENST00000564260 PANK2Q9BZ23 570 aa18.39■□□□□ 0.53
RNF40-206ENST00000564260 TRIM9Q9C026 710 aa18.39■□□□□ 0.53
RNF40-206ENST00000564260 UBN1Q9NPG3 1134 aa18.39■□□□□ 0.53
RNF40-206ENST00000564260 PCDHB7Q9Y5E2 793 aa18.39■□□□□ 0.53
RNF40-206ENST00000564260 TRIOBPQ9H2D6 2365 aa18.38■□□□□ 0.53
RNF40-206ENST00000564260 A0A1B0GVL5 298 aa18.38■□□□□ 0.53
RNF40-206ENST00000564260 N4BP3O15049 544 aa18.38■□□□□ 0.53
RNF40-206ENST00000564260 TLL1O43897 1013 aa18.38■□□□□ 0.53
RNF40-206ENST00000564260 TRAK2O60296 914 aa18.38■□□□□ 0.53
RNF40-206ENST00000564260 MGEA5O60502 916 aa18.38■□□□□ 0.53
RNF40-206ENST00000564260 PRKCBP05771 671 aa18.38■□□□□ 0.53
RNF40-206ENST00000564260 STRN3Q13033 797 aa18.38■□□□□ 0.53
RNF40-206ENST00000564260 PRPF4BQ13523 1007 aaKnown RBP18.38■□□□□ 0.53
RNF40-206ENST00000564260 DHX8Q14562 1220 aaKnown RBP18.38■□□□□ 0.53
RNF40-206ENST00000564260 SLC27A1Q6PCB7 646 aa18.38■□□□□ 0.53
RNF40-206ENST00000564260 MYCT1Q8N699 235 aa18.38■□□□□ 0.53
RNF40-206ENST00000564260 FSIP1Q8NA03 581 aa18.38■□□□□ 0.53
RNF40-206ENST00000564260 SP7Q8TDD2 431 aaPredicted RBP18.38■□□□□ 0.53
RNF40-206ENST00000564260 PGBD4Q96DM1 585 aa18.38■□□□□ 0.53
RNF40-206ENST00000564260 ZBED2Q9BTP6 218 aa18.38■□□□□ 0.53
RNF40-206ENST00000564260 MRPL4Q9BYD3 311 aaKnown RBP18.38■□□□□ 0.53
RNF40-206ENST00000564260 FAM105AQ9NUU6 356 aa18.38■□□□□ 0.53
RNF40-206ENST00000564260 LRFN2Q9ULH4 789 aa18.38■□□□□ 0.53
RNF40-206ENST00000564260 PVALEFA0A1B0GWK0 134 aa18.37■□□□□ 0.53
RNF40-206ENST00000564260 ACTN4O43707 911 aaKnown RBP18.37■□□□□ 0.53
RNF40-206ENST00000564260 CSDE1O75534 798 aaKnown RBP18.37■□□□□ 0.53
RNF40-206ENST00000564260 DNAJB2P25686 324 aa18.37■□□□□ 0.53
RNF40-206ENST00000564260 ZPBP2Q6X784 338 aa18.37■□□□□ 0.53
RNF40-206ENST00000564260 STXBP4Q6ZWJ1 553 aa18.37■□□□□ 0.53
RNF40-206ENST00000564260 ECHDC2Q86YB7 292 aa18.37■□□□□ 0.53
RNF40-206ENST00000564260 ELOA2Q8IYF1 753 aaPredicted RBP18.37■□□□□ 0.53
RNF40-206ENST00000564260 ADPGKQ9BRR6 497 aa18.37■□□□□ 0.53
RNF40-206ENST00000564260 PBX4Q9BYU1 374 aa18.37■□□□□ 0.53
RNF40-206ENST00000564260 RC3H2Q9HBD1 1191 aaKnown RBP18.37■□□□□ 0.53
RNF40-206ENST00000564260 GDPD2Q9HCC8 539 aa18.37■□□□□ 0.53
RNF40-206ENST00000564260 RWDD3Q9Y3V2 267 aa18.37■□□□□ 0.53
RNF40-206ENST00000564260 ADGRA3Q8IWK6 1321 aa18.37■□□□□ 0.53
RNF40-206ENST00000564260 DGKIO75912 1065 aa18.36■□□□□ 0.53
RNF40-206ENST00000564260 ARF4P18085 180 aaPredicted RBP18.36■□□□□ 0.53
RNF40-206ENST00000564260 FGFR4P22455 802 aa18.36■□□□□ 0.53
RNF40-206ENST00000564260 LAMA2P24043 3122 aaKnown RBP18.36■□□□□ 0.53
RNF40-206ENST00000564260 NDUFA8P51970 172 aa18.36■□□□□ 0.53
RNF40-206ENST00000564260 GTF2BQ00403 316 aa18.36■□□□□ 0.53
RNF40-206ENST00000564260 FAM160A1Q05DH4 1040 aa18.36■□□□□ 0.53
RNF40-206ENST00000564260 RAD51AP2Q09MP3 1159 aa18.36■□□□□ 0.53
RNF40-206ENST00000564260 DCAF4L1Q3SXM0 396 aa18.36■□□□□ 0.53
RNF40-206ENST00000564260 MRPL10Q7Z7H8 261 aaKnown RBP18.36■□□□□ 0.53
RNF40-206ENST00000564260 ZNF598Q86UK7 904 aaKnown RBP18.36■□□□□ 0.53
RNF40-206ENST00000564260 CMTR2Q8IYT2 770 aaKnown RBP18.36■□□□□ 0.53
RNF40-206ENST00000564260 TIFAQ96CG3 184 aa18.36■□□□□ 0.53
RNF40-206ENST00000564260 ZNF689Q96CS4 500 aaPredicted RBP18.36■□□□□ 0.53
RNF40-206ENST00000564260 CHAMP1Q96JM3 812 aa18.36■□□□□ 0.53
RNF40-206ENST00000564260 TIGD1Q96MW7 591 aa18.36■□□□□ 0.53
RNF40-206ENST00000564260 SAMD11Q96NU1 681 aa18.36■□□□□ 0.53
RNF40-206ENST00000564260 YME1L1Q96TA2 773 aa18.36■□□□□ 0.53
RNF40-206ENST00000564260 HOOK1Q9UJC3 728 aaKnown RBP18.36■□□□□ 0.53
RNF40-206ENST00000564260 TNFSF13BQ9Y275 285 aa18.36■□□□□ 0.53
RNF40-206ENST00000564260 TTC3P53804 2025 aa18.35■□□□□ 0.53
RNF40-206ENST00000564260 NPHP3-ACAD11A0A0J9YXS1 232 aa18.35■□□□□ 0.53
RNF40-206ENST00000564260 PIGRP01833 764 aa18.35■□□□□ 0.53
RNF40-206ENST00000564260 UNC13DQ70J99 1090 aa18.35■□□□□ 0.53
RNF40-206ENST00000564260 DYMQ7RTS9 669 aa18.35■□□□□ 0.53
RNF40-206ENST00000564260 HAUS6Q7Z4H7 955 aa18.35■□□□□ 0.53
RNF40-206ENST00000564260 GBP4Q96PP9 640 aa18.35■□□□□ 0.53
RNF40-206ENST00000564260 FIZ1Q96SL8 496 aa18.35■□□□□ 0.53
RNF40-206ENST00000564260 MRPL9Q9BYD2 267 aaKnown RBP18.35■□□□□ 0.53
RNF40-206ENST00000564260 TRIM6Q9C030 488 aaPredicted RBP18.35■□□□□ 0.53
RNF40-206ENST00000564260 PCDHB13Q9Y5F0 798 aa18.35■□□□□ 0.53
RNF40-206ENST00000564260 SFI1A8K8P3 1242 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 K7ENM7 598 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 SLC16A4O15374 487 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 TOM1L1O75674 476 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 ZNF202O95125 648 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 UBE2HP62256 183 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 LONRF3Q496Y0 759 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 HERC4Q5GLZ8 1057 aaPredicted RBP18.34■□□□□ 0.53
RNF40-206ENST00000564260 ATF7IP2Q5U623 682 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 ZNF720Q7Z2F6 126 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 MAP4K3Q8IVH8 894 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 FMR1NBQ8N0W7 255 aaPredicted RBP18.34■□□□□ 0.53
RNF40-206ENST00000564260 PAGE5Q96GU1 130 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 KIFC3Q9BVG8 833 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 GTPBP4Q9BZE4 634 aaKnown RBP18.34■□□□□ 0.53
RNF40-206ENST00000564260 TMEM117Q9H0C3 514 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 SLC28A3Q9HAS3 691 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 PANK4Q9NVE7 773 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 SERTAD1Q9UHV2 236 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 PCDHB2Q9Y5E7 798 aa18.34■□□□□ 0.53
RNF40-206ENST00000564260 INPPL1O15357 1258 aa18.33■□□□□ 0.52
RNF40-206ENST00000564260 GTPBP6O43824 516 aaPredicted RBP18.33■□□□□ 0.52
RNF40-206ENST00000564260 IDEP14735 1019 aa18.33■□□□□ 0.52
RNF40-206ENST00000564260 FXR1P51114 621 aaKnown RBP eCLIP18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms