RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	BUB1	O43683	1085 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	MME	P08473	750 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	RARA	P10276	462 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	HOXA7	P31268	230 aa	Predicted RBP	11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	MMP13	P45452	471 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	MRPS35	P82673	323 aa	Known RBP	11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	LACTB	P83111	547 aa	Predicted RBP	11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	SGSM1	Q2NKQ1	1148 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	NAALADL2	Q58DX5	795 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	LDLRAD1	Q5T700	205 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	PPP1R18	Q6NYC8	613 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	GADL1	Q6ZQY3	521 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	REXO1	Q8N1G1	1221 aa	Known RBP	11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	SLC10A4	Q96EP9	437 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	PGM2	Q96G03	612 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	RAB17	Q9H0T7	212 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	RANBP17	Q9H2T7	1088 aa	Known RBP	11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	PAPOLB	Q9NRJ5	636 aa	Known RBP	11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	FAM114A2	Q9NRY5	505 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	WDR70	Q9NW82	654 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	CTNNAL1	Q9UBT7	734 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228		M0R2N6	131 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	PPFIA2	O75334	1257 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	FGFR1OP	O95684	399 aa	Known RBP	11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	OAS1	P00973	400 aa	Known RBP	11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	ABL2	P42684	1182 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	MAN2A1	Q16706	1144 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	UBE2S	Q16763	222 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	ZC3H12A	Q5D1E8	599 aa	Known RBP	11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	SH3D19	Q5HYK7	790 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	THEMIS2	Q5TEJ8	643 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	HGSNAT	Q68CP4	663 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	ANKRD40	Q6AI12	368 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	MTHFD1L	Q6UB35	978 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	KLHL7	Q8IXQ5	586 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	CPXCR1	Q8N123	301 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	GALNT15	Q8N3T1	639 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	C2orf69	Q8N8R5	385 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	NAF1	Q96HR8	494 aa	Known RBP	11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	CCSER1	Q9C0I3	900 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	PSTPIP2	Q9H939	334 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	TMEM260	Q9NX78	707 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	PPP1R9A	Q9ULJ8	1098 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	CTDP1	Q9Y5B0	961 aa	Predicted RBP	11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	ATP8B3	O60423	1300 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	DCDC2C	A8MYV0	355 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	SERPING1	P05155	500 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	NUDT17	P0C025	328 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	CNGA1	P29973	690 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	CTCF	P49711	727 aa	Predicted RBP	11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	ATP11A	P98196	1134 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	GFPT1	Q06210	699 aa	Predicted RBP	11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	PPIL2	Q13356	520 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	SLC9C1	Q4G0N8	1177 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	TREML2	Q5T2D2	321 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	RRAGA	Q7L523	313 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	ANKRD13C	Q8N6S4	541 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	C4orf32	Q8N8J7	132 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	ATG4C	Q96DT6	458 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	TXLNGY	Q9BZA5	131 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	NEUROG2	Q9H2A3	272 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	ECT2	Q9H8V3	914 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	RIC8A	Q9NPQ8	531 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	ARHGEF3	Q9NR81	526 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	AGAP1	Q9UPQ3	857 aa		11.94	□□□□□ -0.5
TCF4-222	ENST00000564228	RBBP6	Q7Z6E9	1792 aa	Known RBP	11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	LRRD1	A4D1F6	860 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	TTC36	A6NLP5	189 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228		O00370	1275 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	IGF2BP3	O00425	579 aa	Known RBP eCLIP	11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	EPHB6	O15197	1021 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	CAPN15	O75808	1086 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	FTCD	O95954	541 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	ITGBL1	O95965	494 aa	Predicted RBP	11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	CHN1	P15882	459 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	SKIV2L2	P42285	1042 aa	Known RBP	11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	KCNJ2	P63252	427 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	FKBP1B	P68106	108 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	BNIP1	Q12981	228 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	MKRN3	Q13064	507 aa	Known RBP	11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	RPS6KA1	Q15418	735 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	TAF11	Q15544	211 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	INF2	Q27J81	1249 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	FOXR2	Q6PJQ5	311 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	ERICH1	Q86X53	443 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	LRRC34	Q8IZ02	419 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	WNK4	Q96J92	1243 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	AGBL1	Q96MI9	1066 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	RAVER2	Q9HCJ3	691 aa	Known RBP	11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	CCPG1	Q9ULG6	757 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	LRRC42	Q9Y546	428 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228	ASB3	Q9Y575	518 aa		11.93	□□□□□ -0.5
TCF4-222	ENST00000564228		A0A0G2JLL6	359 aa	Predicted RBP	11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	USP17L15	C9J2P7	530 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	USP17L13	C9JLJ4	530 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	USP17L11	C9JVI0	530 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	USP17L18	D6R9N7	530 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	USP17L22	D6RA61	530 aa		11.92	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms