RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 LXNQ9BS40 222 aa18.86■□□□□ 0.61
CLN3-211ENST00000564091 FAM86C1Q9NVL1 165 aa18.86■□□□□ 0.61
CLN3-211ENST00000564091 DZANK1Q9NVP4 752 aa18.86■□□□□ 0.61
CLN3-211ENST00000564091 DKC1O60832 514 aaKnown RBP eCLIP18.85■□□□□ 0.61
CLN3-211ENST00000564091 CDKL5O76039 1030 aa18.85■□□□□ 0.61
CLN3-211ENST00000564091 SSBP05455 408 aaKnown RBP eCLIP18.85■□□□□ 0.61
CLN3-211ENST00000564091 YWHABP31946 246 aaKnown RBP18.85■□□□□ 0.61
CLN3-211ENST00000564091 GIT2Q14161 759 aa18.85■□□□□ 0.61
CLN3-211ENST00000564091 EPHA7Q15375 998 aa18.85■□□□□ 0.61
CLN3-211ENST00000564091 NCAPH2Q6IBW4 605 aa18.85■□□□□ 0.61
CLN3-211ENST00000564091 SRGAP1Q7Z6B7 1085 aa18.85■□□□□ 0.61
CLN3-211ENST00000564091 MRPL10Q7Z7H8 261 aaKnown RBP18.85■□□□□ 0.61
CLN3-211ENST00000564091 CABP7Q86V35 215 aa18.85■□□□□ 0.61
CLN3-211ENST00000564091 POTEDQ86YR6 584 aa18.85■□□□□ 0.61
CLN3-211ENST00000564091 URGCPQ8TCY9 931 aa18.85■□□□□ 0.61
CLN3-211ENST00000564091 LIMD1Q9UGP4 676 aa18.85■□□□□ 0.61
CLN3-211ENST00000564091 DBR1Q9UK59 544 aaKnown RBP18.85■□□□□ 0.61
CLN3-211ENST00000564091 SORCS3Q9UPU3 1222 aa18.85■□□□□ 0.61
CLN3-211ENST00000564091 MYO15AQ9UKN7 3530 aa18.84■□□□□ 0.61
CLN3-211ENST00000564091 CARNS1A5YM72 827 aa18.84■□□□□ 0.61
CLN3-211ENST00000564091 POMCP01189 267 aa18.84■□□□□ 0.61
CLN3-211ENST00000564091 ALDH2P05091 517 aa18.84■□□□□ 0.61
CLN3-211ENST00000564091 GCFC2P16383 781 aaKnown RBP18.84■□□□□ 0.61
CLN3-211ENST00000564091 RFC5P40937 340 aa18.84■□□□□ 0.61
CLN3-211ENST00000564091 MTMR3Q13615 1198 aa18.84■□□□□ 0.61
CLN3-211ENST00000564091 CTTNQ14247 550 aaKnown RBP18.84■□□□□ 0.61
CLN3-211ENST00000564091 KIAA1841Q6NSI8 718 aa18.84■□□□□ 0.61
CLN3-211ENST00000564091 C4orf19Q8IY42 314 aa18.84■□□□□ 0.61
CLN3-211ENST00000564091 RNF149Q8NC42 400 aa18.84■□□□□ 0.61
CLN3-211ENST00000564091 DYDC2Q96IM9 177 aa18.84■□□□□ 0.61
CLN3-211ENST00000564091 KLHL5Q96PQ7 755 aa18.84■□□□□ 0.61
CLN3-211ENST00000564091 RSAD1Q9HA92 442 aa18.84■□□□□ 0.61
CLN3-211ENST00000564091 TPCN1Q9ULQ1 816 aa18.84■□□□□ 0.61
CLN3-211ENST00000564091 MYH9P35579 1960 aaKnown RBP18.84■□□□□ 0.61
CLN3-211ENST00000564091 DMDP11532 3685 aa18.83■□□□□ 0.61
CLN3-211ENST00000564091 ZFHX2Q9C0A1 2572 aaPredicted RBP18.83■□□□□ 0.6
CLN3-211ENST00000564091 FAM205CA6NFA0 338 aa18.83■□□□□ 0.6
CLN3-211ENST00000564091 TBX3O15119 743 aa18.83■□□□□ 0.6
CLN3-211ENST00000564091 XBP1P17861 261 aa18.83■□□□□ 0.6
CLN3-211ENST00000564091 CYP4A11Q02928 519 aa18.83■□□□□ 0.6
CLN3-211ENST00000564091 EMC2Q15006 297 aa18.83■□□□□ 0.6
CLN3-211ENST00000564091 XKR9Q5GH70 373 aa18.83■□□□□ 0.6
CLN3-211ENST00000564091 FERMT3Q86UX7 667 aa18.83■□□□□ 0.6
CLN3-211ENST00000564091 EXOC8Q8IYI6 725 aa18.83■□□□□ 0.6
CLN3-211ENST00000564091 UBALD2Q8IYN6 164 aa18.83■□□□□ 0.6
CLN3-211ENST00000564091 TDRD5Q8NAT2 981 aaKnown RBP18.83■□□□□ 0.6
CLN3-211ENST00000564091 FAM193BQ96PV7 902 aaPredicted RBP18.83■□□□□ 0.6
CLN3-211ENST00000564091 FAN1Q9Y2M0 1017 aa18.83■□□□□ 0.6
CLN3-211ENST00000564091 PPME1Q9Y570 386 aa18.83■□□□□ 0.6
CLN3-211ENST00000564091 NRP1O14786 923 aa18.82■□□□□ 0.6
CLN3-211ENST00000564091 PFKFB2O60825 505 aa18.82■□□□□ 0.6
CLN3-211ENST00000564091 CTDNEP1O95476 244 aa18.82■□□□□ 0.6
CLN3-211ENST00000564091 CNPP09543 421 aaKnown RBP18.82■□□□□ 0.6
CLN3-211ENST00000564091 KLRC2P26717 231 aa18.82■□□□□ 0.6
CLN3-211ENST00000564091 SPIRE1Q08AE8 756 aa18.82■□□□□ 0.6
CLN3-211ENST00000564091 OTUD6AQ7L8S5 288 aa18.82■□□□□ 0.6
CLN3-211ENST00000564091 PPFIBP1Q86W92 1011 aa18.82■□□□□ 0.6
CLN3-211ENST00000564091 TPH2Q8IWU9 490 aa18.82■□□□□ 0.6
CLN3-211ENST00000564091 ZDHHC14Q8IZN3 488 aa18.82■□□□□ 0.6
CLN3-211ENST00000564091 SMG8Q8ND04 991 aaKnown RBP18.82■□□□□ 0.6
CLN3-211ENST00000564091 TMEM175Q9BSA9 504 aa18.82■□□□□ 0.6
CLN3-211ENST00000564091 EMILIN2Q9BXX0 1053 aa18.82■□□□□ 0.6
CLN3-211ENST00000564091 EIF2AQ9BY44 585 aaKnown RBP18.82■□□□□ 0.6
CLN3-211ENST00000564091 RNF39Q9H2S5 420 aa18.82■□□□□ 0.6
CLN3-211ENST00000564091 ZSWIM4Q9H7M6 989 aa18.82■□□□□ 0.6
CLN3-211ENST00000564091 PRG3Q9Y2Y8 225 aaPredicted RBP18.82■□□□□ 0.6
CLN3-211ENST00000564091 STK36Q9NRP7 1315 aa18.81■□□□□ 0.6
CLN3-211ENST00000564091 CNTNAP2Q9UHC6 1331 aa18.81■□□□□ 0.6
CLN3-211ENST00000564091 SPDYE4A6NLX3 237 aa18.81■□□□□ 0.6
CLN3-211ENST00000564091 H0Y858 1186 aa18.81■□□□□ 0.6
CLN3-211ENST00000564091 C2CD2LO14523 706 aa18.81■□□□□ 0.6
CLN3-211ENST00000564091 LILRB3O75022 631 aa18.81■□□□□ 0.6
CLN3-211ENST00000564091 SLITRK3O94933 977 aa18.81■□□□□ 0.6
CLN3-211ENST00000564091 NCLP19338 710 aaKnown RBP18.81■□□□□ 0.6
CLN3-211ENST00000564091 CLCN4P51793 760 aa18.81■□□□□ 0.6
CLN3-211ENST00000564091 NR5A1Q13285 461 aa18.81■□□□□ 0.6
CLN3-211ENST00000564091 GPR149Q86SP6 731 aa18.81■□□□□ 0.6
CLN3-211ENST00000564091 TCP11Q8WWU5 503 aa18.81■□□□□ 0.6
CLN3-211ENST00000564091 ATOH1Q92858 354 aaPredicted RBP18.81■□□□□ 0.6
CLN3-211ENST00000564091 NAP1L4Q99733 375 aaKnown RBP18.81■□□□□ 0.6
CLN3-211ENST00000564091 SFXN1Q9H9B4 322 aa18.81■□□□□ 0.6
CLN3-211ENST00000564091 XPNPEP1Q9NQW7 623 aa18.81■□□□□ 0.6
CLN3-211ENST00000564091 KANSL3Q9P2N6 904 aa18.81■□□□□ 0.6
CLN3-211ENST00000564091 ORC3Q9UBD5 711 aaPredicted RBP18.81■□□□□ 0.6
CLN3-211ENST00000564091 USTQ9Y2C2 406 aa18.81■□□□□ 0.6
CLN3-211ENST00000564091 ASAP2O43150 1006 aa18.8■□□□□ 0.6
CLN3-211ENST00000564091 ITGA4P13612 1032 aa18.8■□□□□ 0.6
CLN3-211ENST00000564091 TAS1R1Q7RTX1 841 aa18.8■□□□□ 0.6
CLN3-211ENST00000564091 CPB2Q96IY4 423 aa18.8■□□□□ 0.6
CLN3-211ENST00000564091 GAD1Q99259 594 aa18.8■□□□□ 0.6
CLN3-211ENST00000564091 MTRQ99707 1265 aa18.8■□□□□ 0.6
CLN3-211ENST00000564091 MRPL17Q9NRX2 175 aaKnown RBP18.8■□□□□ 0.6
CLN3-211ENST00000564091 MARCH5Q9NX47 278 aa18.8■□□□□ 0.6
CLN3-211ENST00000564091 HES2Q9Y543 173 aa18.8■□□□□ 0.6
CLN3-211ENST00000564091 IPPQ9Y573 584 aa18.8■□□□□ 0.6
CLN3-211ENST00000564091 GAS2O43903 313 aaKnown RBP18.79■□□□□ 0.6
CLN3-211ENST00000564091 TSPAN1O60635 241 aa18.79■□□□□ 0.6
CLN3-211ENST00000564091 ERLIN2O94905 339 aa18.79■□□□□ 0.6
CLN3-211ENST00000564091 BAG4O95429 457 aaKnown RBP18.79■□□□□ 0.6
CLN3-211ENST00000564091 MYBP10242 640 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms