RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 MMP13P45452 471 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 LRCH2Q5VUJ6 765 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 OTUD6AQ7L8S5 288 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 ZNF720Q7Z2F6 126 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 KIAA0825Q8IV33 1275 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 SYCP3Q8IZU3 236 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 MGARPQ8TDB4 240 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 CCDC17Q96LX7 622 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 FIZ1Q96SL8 496 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 AGPAT1Q99943 283 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 A1CFQ9NQ94 594 aaKnown RBP14.25□□□□□ -0.13
CLN3-210ENST00000563874 CD2APQ9Y5K6 639 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 FRMPD4Q14CM0 1322 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 CCT8L1PA6NM43 557 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 IRF6O14896 467 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 DHX34Q14147 1143 aaKnown RBP14.24□□□□□ -0.13
CLN3-210ENST00000563874 LRRC14Q15048 493 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 MSL1Q68DK7 614 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 CCDC137Q6PK04 289 aaKnown RBP14.24□□□□□ -0.13
CLN3-210ENST00000563874 GIMAP7Q8NHV1 300 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 KAT5Q92993 513 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 TBC1D31Q96DN5 1066 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 COA1Q9GZY4 146 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 RASAL2Q9UJF2 1139 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 FAM187AA6NFU0 413 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 G3V3G9 751 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 EIF3DO15371 548 aaKnown RBP eCLIP14.24□□□□□ -0.13
CLN3-210ENST00000563874 PHF2O75151 1096 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 COMTP21964 271 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 TBC1D10BQ4KMP7 808 aaPredicted RBP14.24□□□□□ -0.13
CLN3-210ENST00000563874 LACTB2Q53H82 288 aaPredicted RBP14.24□□□□□ -0.13
CLN3-210ENST00000563874 DCAF8Q5TAQ9 597 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 SYDE2Q5VT97 1194 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 OTOP1Q7RTM1 612 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 TRMT1LQ7Z2T5 733 aaKnown RBP14.24□□□□□ -0.13
CLN3-210ENST00000563874 ARHGEF19Q8IW93 802 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 POP1Q99575 1024 aaKnown RBP14.24□□□□□ -0.13
CLN3-210ENST00000563874 ATP8B3O60423 1300 aa14.24□□□□□ -0.13
CLN3-210ENST00000563874 FOXO6A8MYZ6 492 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 PPEF1O14829 653 aaPredicted RBP14.23□□□□□ -0.13
CLN3-210ENST00000563874 PYGMP11217 842 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 PREPLQ4J6C6 727 aaPredicted RBP14.23□□□□□ -0.13
CLN3-210ENST00000563874 CCDC105Q8IYK2 499 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 PGM2Q96G03 612 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 MLXIPLQ9NP71 852 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 BAIAP2L1Q9UHR4 511 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 DIS3Q9Y2L1 958 aaKnown RBP14.23□□□□□ -0.13
CLN3-210ENST00000563874 SH3BP1Q9Y3L3 701 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 SMCHD1A6NHR9 2005 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 IGLV3-22A0A075B6J6 115 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 FOSP01100 380 aaPredicted RBP14.23□□□□□ -0.13
CLN3-210ENST00000563874 GCLMP48507 274 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 JAG1P78504 1218 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 BFSP1Q12934 665 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 XRCC4Q13426 336 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 RPUSD2Q8IZ73 545 aaKnown RBP14.23□□□□□ -0.13
CLN3-210ENST00000563874 UBL4BQ8N7F7 174 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 ANKS4BQ8N8V4 417 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 TCP11Q8WWU5 503 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 MKL1Q969V6 931 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 KDM4CQ9H3R0 1056 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 NYAP2Q9P242 653 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 TRPC6Q9Y210 931 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 EMSYQ7Z589 1322 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 ADAMTSL1Q8N6G6 1762 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 CIITAP33076 1130 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 CRKP46108 304 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 NEDD9Q14511 834 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 SH3BP5LQ7L8J4 393 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 PNMA8AQ86V59 439 aaPredicted RBP14.23□□□□□ -0.13
CLN3-210ENST00000563874 TAX1BP1Q86VP1 789 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 ZSWIM2Q8NEG5 633 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 ELMO3Q96BJ8 720 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 CENPTQ96BT3 561 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 ZSWIM1Q9BR11 485 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 SH2D3AQ9BRG2 576 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.23□□□□□ -0.13
CLN3-210ENST00000563874 PKD2L1Q9P0L9 805 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 ODF2LQ9ULJ1 636 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 KIF13BQ9NQT8 1826 aa14.23□□□□□ -0.13
CLN3-210ENST00000563874 DDX39AO00148 427 aaKnown RBP14.22□□□□□ -0.13
CLN3-210ENST00000563874 PPIP5K2O43314 1243 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 CLTAP09496 248 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 PPP2R5EQ16537 467 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 TBC1D1Q86TI0 1168 aaPredicted RBP14.22□□□□□ -0.13
CLN3-210ENST00000563874 N4BP2L2Q92802 583 aaPredicted RBP14.22□□□□□ -0.13
CLN3-210ENST00000563874 MKNK1Q9BUB5 465 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 DBNDD1Q9H9R9 158 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 DNAJC17Q9NVM6 304 aaKnown RBP14.22□□□□□ -0.13
CLN3-210ENST00000563874 SAMD15Q9P1V8 674 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 AHDC1Q5TGY3 1603 aaPredicted RBP14.22□□□□□ -0.13
CLN3-210ENST00000563874 SYNGAP1Q96PV0 1343 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 ZNF831Q5JPB2 1677 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 CREB1P16220 341 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 CHRNA3P32297 505 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 NF2P35240 595 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 ELF3P78545 371 aaPredicted RBP14.22□□□□□ -0.13
CLN3-210ENST00000563874 KIF22Q14807 665 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 LONRF1Q17RB8 773 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 RHOT2Q8IXI1 618 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms