RNA–Protein interactions for RNA: ENST00000562298.1

VPS9D1-AS1-201, VPS9D1 antisense RNA 1, humanhuman

TSL 1 (best)

Gene VPS9D1-AS1, Length 931 nt, Biotype antisense RNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-AS1-201ENST00000562298 RARS2Q5T160 578 aaKnown RBP18.66■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 NCAPH2Q6IBW4 605 aa18.66■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 SRGAP1Q7Z6B7 1085 aa18.66■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 MRPL10Q7Z7H8 261 aaKnown RBP18.66■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 SLC22A17Q8WUG5 538 aa18.66■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 TNFRSF25Q93038 417 aa18.66■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 PGBD4Q96DM1 585 aa18.66■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 DYDC2Q96IM9 177 aa18.66■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 PHOX2BQ99453 314 aa18.66■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 NR2E1Q9Y466 385 aa18.66■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 CARNS1A5YM72 827 aa18.65■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 FDPSP14324 419 aaKnown RBP18.65■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 VCPP55072 806 aaKnown RBP18.65■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 CYP4A11Q02928 519 aa18.65■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 GIT2Q14161 759 aa18.65■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 CTTNQ14247 550 aaKnown RBP18.65■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 PTPN14Q15678 1187 aa18.65■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 EXOC8Q8IYI6 725 aa18.65■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 RNF149Q8NC42 400 aa18.65■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 NAP1L4Q99733 375 aaKnown RBP18.65■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 RSAD1Q9HA92 442 aa18.65■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 ORC3Q9UBD5 711 aaPredicted RBP18.65■□□□□ 0.58
VPS9D1-AS1-201ENST00000562298 GAS2O43903 313 aaKnown RBP18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 PDGFBP01127 241 aaPredicted RBP18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 MTHFRP42898 656 aa18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 AK2P54819 239 aa18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 TCF15Q12870 199 aa18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 XKR9Q5GH70 373 aa18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 KIAA1841Q6NSI8 718 aa18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 OTUD6AQ7L8S5 288 aa18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 ZBTB33Q86T24 672 aa18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 FERMT3Q86UX7 667 aa18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 KREMEN2Q8NCW0 462 aa18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 SMG8Q8ND04 991 aaKnown RBP18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 URGCPQ8TCY9 931 aa18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 ZSWIM4Q9H7M6 989 aa18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 XPNPEP1Q9NQW7 623 aa18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 DZANK1Q9NVP4 752 aa18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 DENND4AQ7Z401 1863 aa18.64■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 MARCH6O60337 910 aa18.63■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 SLITRK3O94933 977 aa18.63■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 POMCP01189 267 aa18.63■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 NCLP19338 710 aaKnown RBP18.63■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 SLFN12Q8IYM2 578 aa18.63■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 TMEM87AQ8NBN3 555 aa18.63■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 TCP11Q8WWU5 503 aa18.63■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 RIPOR3Q96MK2 946 aa18.63■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 MTRQ99707 1265 aa18.63■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 SMOC2Q9H3U7 446 aa18.63■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 CNTNAP2Q9UHC6 1331 aa18.63■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 VPS13AQ96RL7 3174 aa18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 ASAP2O43150 1006 aa18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 TSPAN1O60635 241 aa18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 LARGE1O95461 756 aa18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 BRD1O95696 1058 aa18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 SSBP05455 408 aaKnown RBP eCLIP18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 KRT2P35908 639 aa18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 PTPN5P54829 565 aa18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 MTMR3Q13615 1198 aa18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 ME3Q16798 604 aa18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 TPH2Q8IWU9 490 aa18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 NECAB1Q8N987 351 aa18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 WASF1Q92558 559 aa18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 EIF2AK1Q9BQI3 630 aaKnown RBP18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 TMEM175Q9BSA9 504 aa18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 EIF2AQ9BY44 585 aaKnown RBP18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 SORCS3Q9UPU3 1222 aa18.62■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 DMDP11532 3685 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 WNT7AO00755 349 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 NRP1O14786 923 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 LILRB3O75022 631 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 ERLIN2O94905 339 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 BAG4O95429 457 aaKnown RBP18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 CNPP09543 421 aaKnown RBP18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 CLCN4P51793 760 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 ANAPC15P60006 121 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 PTENP60484 403 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 ATAT1Q5SQI0 421 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 TMC5Q6UXY8 1006 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 CABP7Q86V35 215 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 GTF3C6Q969F1 213 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 KLHL5Q96PQ7 755 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 PRRX2Q99811 253 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 HSD17B14Q9BPX1 270 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 RNF39Q9H2S5 420 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 MARCH5Q9NX47 278 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 KANSL3Q9P2N6 904 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 IPPQ9Y573 584 aa18.61■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 ALDH2P05091 517 aa18.6■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 ASGR2P07307 311 aa18.6■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 AVPR2P30518 371 aa18.6■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 ANKRD1Q15327 319 aa18.6■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 PPFIBP1Q86W92 1011 aa18.6■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 UBALD2Q8IYN6 164 aa18.6■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 ZDHHC14Q8IZN3 488 aa18.6■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 TDRD5Q8NAT2 981 aaKnown RBP18.6■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 CNNM3Q8NE01 707 aa18.6■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 ASAP3Q8TDY4 903 aa18.6■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 CPB2Q96IY4 423 aa18.6■□□□□ 0.57
VPS9D1-AS1-201ENST00000562298 FAM193BQ96PV7 902 aaPredicted RBP18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms