RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 RSPH1Q8WYR4 309 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 PGBD4Q96DM1 585 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 CDCA3Q99618 268 aaPredicted RBP11.45□□□□□ -0.58
CLK3-205ENST00000561673 NGRNQ9NPE2 291 aaKnown RBP11.45□□□□□ -0.58
CLK3-205ENST00000561673 ENTPD7Q9NQZ7 604 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 TBC1D13Q9NVG8 400 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 INPP5FQ9Y2H2 1132 aa11.45□□□□□ -0.58
CLK3-205ENST00000561673 PLXNA4Q9HCM2 1894 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 ZC3H11AO75152 810 aaKnown RBP eCLIP11.44□□□□□ -0.58
CLK3-205ENST00000561673 GALTP07902 379 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 OR52Z1P0C646 297 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 GLRA2P23416 452 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 RNASELQ05823 741 aaKnown RBP11.44□□□□□ -0.58
CLK3-205ENST00000561673 POU5F1BQ06416 359 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 ORC2Q13416 577 aaPredicted RBP11.44□□□□□ -0.58
CLK3-205ENST00000561673 GNL2Q13823 731 aaKnown RBP11.44□□□□□ -0.58
CLK3-205ENST00000561673 CAPSQ13938 189 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 KCNC3Q14003 757 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 TFDP1Q14186 410 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 PCBP1Q15365 356 aaKnown RBP eCLIP11.44□□□□□ -0.58
CLK3-205ENST00000561673 TTC38Q5R3I4 469 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 MAEAQ7L5Y9 396 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 TMEM173Q86WV6 379 aaPredicted RBP11.44□□□□□ -0.58
CLK3-205ENST00000561673 ZNF280BQ86YH2 543 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 C4orf32Q8N8J7 132 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 MRPL43Q8N983 215 aaKnown RBP11.44□□□□□ -0.58
CLK3-205ENST00000561673 CPB2Q96IY4 423 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 CCDC43Q96MW1 224 aaKnown RBP11.44□□□□□ -0.58
CLK3-205ENST00000561673 POLR3CQ9BUI4 534 aaPredicted RBP11.44□□□□□ -0.58
CLK3-205ENST00000561673 NRDE2Q9H7Z3 1164 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 TUFT1Q9NNX1 390 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 C11orf16Q9NQ32 467 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 RAPGEFL1Q9UHV5 662 aa11.44□□□□□ -0.58
CLK3-205ENST00000561673 FSD2A1L4K1 749 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 FAM86C2PA6NEL3 165 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 C2orf71A6NGG8 1288 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 INO80B-WBP1J3KQ70 363 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 B4GALT3O60512 393 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 TSPAN1O60635 241 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 USO1O60763 962 aaKnown RBP11.43□□□□□ -0.58
CLK3-205ENST00000561673 ERLIN2O94905 339 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 NCLP19338 710 aaKnown RBP11.43□□□□□ -0.58
CLK3-205ENST00000561673 U2AF2P26368 475 aaKnown RBP eCLIP11.43□□□□□ -0.58
CLK3-205ENST00000561673 RPA1P27694 616 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 AXLP30530 894 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 TRAPPC10P48553 1259 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 MBTD1Q05BQ5 628 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 NBR1Q14596 966 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 SMC1AQ14683 1233 aaKnown RBP11.43□□□□□ -0.58
CLK3-205ENST00000561673 RABEP1Q15276 862 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 AMHR2Q16671 573 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 TMEM31Q5JXX7 168 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 NOTUMQ6P988 496 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 TMEM184AQ6ZMB5 413 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 SMG8Q8ND04 991 aaKnown RBP11.43□□□□□ -0.58
CLK3-205ENST00000561673 IGSF21Q96ID5 467 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 NACC1Q96RE7 527 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 LRFN3Q9BTN0 628 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 EIF2AQ9BY44 585 aaKnown RBP11.43□□□□□ -0.58
CLK3-205ENST00000561673 NFKBIZQ9BYH8 718 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 GBP3Q9H0R5 595 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 POLR3FQ9H1D9 316 aaPredicted RBP11.43□□□□□ -0.58
CLK3-205ENST00000561673 RSAD1Q9HA92 442 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 GPRC5CQ9NQ84 441 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 DNAJB4Q9UDY4 337 aa11.43□□□□□ -0.58
CLK3-205ENST00000561673 DBR1Q9UK59 544 aaKnown RBP11.43□□□□□ -0.58
CLK3-205ENST00000561673 CNTNAP2Q9UHC6 1331 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 GPR37L1O60883 481 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 DDHD2O94830 711 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 CXCL14O95715 111 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 ALADP13716 330 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 SLC11A1P49279 550 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 TOB1P50616 345 aaPredicted RBP11.42□□□□□ -0.58
CLK3-205ENST00000561673 NCBP1Q09161 790 aaKnown RBP11.42□□□□□ -0.58
CLK3-205ENST00000561673 ECM1Q16610 540 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 LLGL2Q6P1M3 1020 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 POTEGQ6S5H5 508 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 DDX53Q86TM3 631 aaKnown RBP11.42□□□□□ -0.58
CLK3-205ENST00000561673 VPS52Q8N1B4 723 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 ERMNQ8TAM6 284 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 URGCPQ8TCY9 931 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 BCL7CQ8WUZ0 217 aaPredicted RBP11.42□□□□□ -0.58
CLK3-205ENST00000561673 RNF25Q96BH1 459 aaPredicted RBP11.42□□□□□ -0.58
CLK3-205ENST00000561673 TMEM169Q96HH4 297 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 POP1Q99575 1024 aaKnown RBP11.42□□□□□ -0.58
CLK3-205ENST00000561673 CSRNP2Q9H175 543 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 S1PR5Q9H228 398 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 UBN1Q9NPG3 1134 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 KANSL3Q9P2N6 904 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 NOL7Q9UMY1 257 aaKnown RBP11.42□□□□□ -0.58
CLK3-205ENST00000561673 USP15Q9Y4E8 981 aaPredicted RBP11.42□□□□□ -0.58
CLK3-205ENST00000561673 HES2Q9Y543 173 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 IPPQ9Y573 584 aa11.42□□□□□ -0.58
CLK3-205ENST00000561673 CARNS1A5YM72 827 aa11.41□□□□□ -0.58
CLK3-205ENST00000561673 ARL5CA6NH57 179 aa11.41□□□□□ -0.58
CLK3-205ENST00000561673 B4GALT5O43286 388 aa11.41□□□□□ -0.58
CLK3-205ENST00000561673 DCXO43602 365 aa11.41□□□□□ -0.58
CLK3-205ENST00000561673 ST18O60284 1047 aa11.41□□□□□ -0.58
CLK3-205ENST00000561673 CLASP2O75122 1294 aaKnown RBP11.41□□□□□ -0.58
CLK3-205ENST00000561673 CD2BP2O95400 341 aaKnown RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms