RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 CRKP46108 304 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 MARCKSL1P49006 195 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 DR1Q01658 176 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 BIRC3Q13489 604 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 MTMR3Q13615 1198 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 BMT2Q1RMZ1 405 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 ZNF746Q6NUN9 644 aaPredicted RBP12.22□□□□□ -0.45
CUX1-218ENST00000560541 TRMT1LQ7Z2T5 733 aaKnown RBP12.22□□□□□ -0.45
CUX1-218ENST00000560541 C1orf131Q8NDD1 294 aaKnown RBP12.22□□□□□ -0.45
CUX1-218ENST00000560541 SLC20A1Q8WUM9 679 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 DCAF4Q8WV16 495 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 EPAS1Q99814 870 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 HAUS2Q9NVX0 235 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 FOCADQ5VW36 1801 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 A0A0A6YYK5 440 aaPredicted RBP12.21□□□□□ -0.45
CUX1-218ENST00000560541 UBAP1LF5GYI3 381 aa12.21□□□□□ -0.45
CUX1-218ENST00000560541 SMTNP53814 917 aa12.21□□□□□ -0.45
CUX1-218ENST00000560541 JAG1P78504 1218 aa12.21□□□□□ -0.45
CUX1-218ENST00000560541 MOXD1Q6UVY6 613 aa12.21□□□□□ -0.45
CUX1-218ENST00000560541 SH3BP5LQ7L8J4 393 aa12.21□□□□□ -0.45
CUX1-218ENST00000560541 SPATA21Q7Z572 469 aa12.21□□□□□ -0.45
CUX1-218ENST00000560541 NCAPG2Q86XI2 1143 aa12.21□□□□□ -0.45
CUX1-218ENST00000560541 NSMCE1Q8WV22 266 aa12.21□□□□□ -0.45
CUX1-218ENST00000560541 HOOK2Q96ED9 719 aa12.21□□□□□ -0.45
CUX1-218ENST00000560541 CCDC17Q96LX7 622 aa12.21□□□□□ -0.45
CUX1-218ENST00000560541 OSBPL7Q9BZF2 842 aa12.21□□□□□ -0.45
CUX1-218ENST00000560541 GPR88Q9GZN0 384 aa12.21□□□□□ -0.45
CUX1-218ENST00000560541 TISP43B9A030 160 aa12.21□□□□□ -0.46
CUX1-218ENST00000560541 RTN3O95197 1032 aaPredicted RBP12.21□□□□□ -0.46
CUX1-218ENST00000560541 TNFAIP3P21580 790 aa12.21□□□□□ -0.46
CUX1-218ENST00000560541 POU5F1Q01860 360 aaKnown RBP12.21□□□□□ -0.46
CUX1-218ENST00000560541 TBC1D10BQ4KMP7 808 aaPredicted RBP12.21□□□□□ -0.46
CUX1-218ENST00000560541 SYDE2Q5VT97 1194 aa12.21□□□□□ -0.46
CUX1-218ENST00000560541 SLC30A9Q6PML9 568 aa12.21□□□□□ -0.46
CUX1-218ENST00000560541 CPLX4Q7Z7G2 160 aa12.21□□□□□ -0.46
CUX1-218ENST00000560541 EIF1ADQ8N9N8 165 aaKnown RBP12.21□□□□□ -0.46
CUX1-218ENST00000560541 C18orf8Q96DM3 657 aa12.21□□□□□ -0.46
CUX1-218ENST00000560541 FAM20AQ96MK3 541 aa12.21□□□□□ -0.46
CUX1-218ENST00000560541 WDR18Q9BV38 432 aa12.21□□□□□ -0.46
CUX1-218ENST00000560541 STK33Q9BYT3 514 aa12.21□□□□□ -0.46
CUX1-218ENST00000560541 INTS2Q9H0H0 1204 aaKnown RBP12.21□□□□□ -0.46
CUX1-218ENST00000560541 VCPKMTQ9H867 229 aa12.21□□□□□ -0.46
CUX1-218ENST00000560541 PARVGQ9HBI0 331 aa12.21□□□□□ -0.46
CUX1-218ENST00000560541 FAM114A2Q9NRY5 505 aa12.21□□□□□ -0.46
CUX1-218ENST00000560541 ATXN2Q99700 1313 aaKnown RBP12.21□□□□□ -0.46
CUX1-218ENST00000560541 BHMG1C9JSJ3 638 aaPredicted RBP12.2□□□□□ -0.46
CUX1-218ENST00000560541 TBX3O15119 743 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 SLITRK3O94933 977 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 LMNB1P20700 586 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 MAGEA10P43363 369 aaPredicted RBP12.2□□□□□ -0.46
CUX1-218ENST00000560541 C6orf89Q6UWU4 347 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 FAM178BQ8IXR5 827 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 FBXO25Q8TCJ0 367 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 KRT35Q92764 455 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 STAMBPL1Q96FJ0 436 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 SEC16BQ96JE7 1060 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 SELENOSQ9BQE4 189 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 PCIF1Q9H4Z3 704 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 ATP6V0A4Q9HBG4 840 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 PKD2L1Q9P0L9 805 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 WRAP73Q9P2S5 460 aaPredicted RBP12.2□□□□□ -0.46
CUX1-218ENST00000560541 FOXN3O00409 490 aaPredicted RBP12.2□□□□□ -0.46
CUX1-218ENST00000560541 DNM1LO00429 736 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 ATMINO43313 823 aaPredicted RBP12.2□□□□□ -0.46
CUX1-218ENST00000560541 RASSF9O75901 435 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 TMEM253P0C7T8 217 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 HOXA10P31260 410 aaPredicted RBP12.2□□□□□ -0.46
CUX1-218ENST00000560541 ODR4Q5SWX8 454 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 PHLDB3Q6NSJ2 640 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 CYB5D1Q6P9G0 228 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 HS2ST1Q7LGA3 356 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 YTHDF3Q7Z739 585 aaKnown RBP12.2□□□□□ -0.46
CUX1-218ENST00000560541 PAGR1Q9BTK6 254 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 OLFML3Q9NRN5 406 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 BAIAP2L1Q9UHR4 511 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 FRMD4BQ9Y2L6 1034 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 DAAM1Q9Y4D1 1078 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 DDX39AO00148 427 aaKnown RBP12.2□□□□□ -0.46
CUX1-218ENST00000560541 EXOC3O60645 756 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 GH2P01242 217 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 SLCO1A2P46721 670 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 PTENP60484 403 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 DLG4P78352 724 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 MYL7Q01449 175 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 PPATQ06203 517 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 TMEM62Q0P6H9 643 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 C1orf186Q6ZWK4 172 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 SP8Q8IXZ3 490 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 SYCP3Q8IZU3 236 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 FAM167BQ9BTA0 163 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 ACP6Q9NPH0 428 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 AGPAT3Q9NRZ7 376 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 NYAP2Q9P242 653 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 CTTNBP2NLQ9P2B4 639 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 ZNF219Q9P2Y4 722 aaPredicted RBP12.2□□□□□ -0.46
CUX1-218ENST00000560541 APEX2Q9UBZ4 518 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 FAM198AQ9UFP1 575 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 INTUQ9ULD6 942 aa12.2□□□□□ -0.46
CUX1-218ENST00000560541 GTPBP10A4D1E9 387 aaKnown RBP12.19□□□□□ -0.46
CUX1-218ENST00000560541 CTNND1O60716 968 aaKnown RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms