RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 AGPAT5Q9NUQ2 364 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 RMND1Q9NWS8 449 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 EXOC7Q9UPT5 735 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 UBE4BO95155 1302 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 ADGRA3Q8IWK6 1321 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 MYH11P35749 1972 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 SCN5AQ14524 2016 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 N4BP3O15049 544 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 TSPAN1O60635 241 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 KIF20AO95235 890 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 GCNT3O95395 438 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 STAG3L1P0CL83 205 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 PSMD2Q13200 908 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 GPNMBQ14956 572 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 TMEM240Q5SV17 173 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 HAUS6Q7Z4H7 955 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 GRAMD1CQ8IYS0 662 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 TDHQ8IZJ6 230 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 TMEM161BQ8NDZ6 487 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 TRIM6Q9C030 488 aaPredicted RBP11.08□□□□□ -0.64
USP3-216ENST00000559873 CCDC113Q9H0I3 377 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 TSPYL2Q9H2G4 693 aaPredicted RBP11.08□□□□□ -0.64
USP3-216ENST00000559873 FZD8Q9H461 694 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 ST6GALNAC4Q9H4F1 302 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 MINDY3Q9H8M7 445 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 POLD4Q9HCU8 107 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 LMBRD1Q9NUN5 540 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 PCDHB13Q9Y5F0 798 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 SLC4A7Q9Y6M7 1214 aa11.08□□□□□ -0.64
USP3-216ENST00000559873 HNRNPDLO14979 420 aaKnown RBP11.07□□□□□ -0.64
USP3-216ENST00000559873 HOXA2O43364 376 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 RPN1P04843 607 aaKnown RBP11.07□□□□□ -0.64
USP3-216ENST00000559873 FGFR4P22455 802 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 MCM4P33991 863 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 EPHB4P54760 987 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 WDR5P61964 334 aaKnown RBP11.07□□□□□ -0.64
USP3-216ENST00000559873 GTF2BQ00403 316 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 DPYDQ12882 1025 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 DCAF4L1Q3SXM0 396 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 ZPBP2Q6X784 338 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 SLC24A5Q71RS6 500 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 C16orf59Q7L2K0 433 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 ZNF720Q7Z2F6 126 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 MAP4K3Q8IVH8 894 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 PHOSPHO2Q8TCD6 241 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 RSPH1Q8WYR4 309 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 SMARCE1Q969G3 411 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 ADAM2Q99965 735 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 TRAIPQ9BWF2 469 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 TMEM206Q9H813 350 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 RGS18Q9NS28 235 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 LRFN2Q9ULH4 789 aa11.07□□□□□ -0.64
USP3-216ENST00000559873 EIF3DO15371 548 aaKnown RBP eCLIP11.06□□□□□ -0.64
USP3-216ENST00000559873 CSDE1O75534 798 aaKnown RBP11.06□□□□□ -0.64
USP3-216ENST00000559873 ARF4P18085 180 aaPredicted RBP11.06□□□□□ -0.64
USP3-216ENST00000559873 NMT1P30419 496 aaKnown RBP11.06□□□□□ -0.64
USP3-216ENST00000559873 SARSP49591 514 aaKnown RBP11.06□□□□□ -0.64
USP3-216ENST00000559873 LIG4P49917 911 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 KCNB1Q14721 858 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 AMHR2Q16671 573 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 ZNF568Q3ZCX4 644 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 ATF7IP2Q5U623 682 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 SLC27A1Q6PCB7 646 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 NPAS4Q8IUM7 802 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 MYOCDQ8IZQ8 938 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 SYCP3Q8IZU3 236 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 SYAP1Q96A49 352 aaPredicted RBP11.06□□□□□ -0.64
USP3-216ENST00000559873 PGBD4Q96DM1 585 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 GSDMAQ96QA5 445 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 ACCSQ96QU6 501 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 NUP62CLQ9H1M0 184 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 TMX1Q9H3N1 280 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 TBC1D7Q9P0N9 293 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 TBX20Q9UMR3 447 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 TNFSF13BQ9Y275 285 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 TET1Q8NFU7 2136 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 MICAL3Q7RTP6 2002 aa11.06□□□□□ -0.64
USP3-216ENST00000559873 A0A0U1RQF3 1178 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 A0A1B0GUA9 196 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 ENPP3O14638 875 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 B4GALT5O43286 388 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 TOM1L1O75674 476 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 PPP1R37O75864 691 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 RHOBTB3O94955 611 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 PIGRP01833 764 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 PRR29P0C7W0 189 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 ATP2A2P16615 1042 aaKnown RBP11.05□□□□□ -0.64
USP3-216ENST00000559873 CASP1P29466 404 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 MATR3P43243 847 aaKnown RBP eCLIP11.05□□□□□ -0.646e-9■■□□□ 14.1
USP3-216ENST00000559873 PNOCQ13519 176 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 HSP90AA2PQ14568 343 aaPredicted RBP11.05□□□□□ -0.64
USP3-216ENST00000559873 DSC3Q14574 896 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 SHHQ15465 462 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 KMT5BQ4FZB7 885 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 C9orf50Q5SZB4 431 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 L1TD1Q5T7N2 865 aaKnown RBP11.05□□□□□ -0.64
USP3-216ENST00000559873 RASIP1Q5U651 963 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 HS2ST1Q7LGA3 356 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 VWCEQ96DN2 955 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 FIZ1Q96SL8 496 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms