RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 GGNQ86UU5 652 aa5.13□□□□□ -1.59
VPS13C-207ENST00000558919 SGMS1Q86VZ5 419 aa5.13□□□□□ -1.59
VPS13C-207ENST00000558919 ANKRD35Q8N283 1001 aa5.13□□□□□ -1.59
VPS13C-207ENST00000558919 ZNF808Q8N4W9 903 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-207ENST00000558919 ATL2Q8NHH9 583 aa5.13□□□□□ -1.59
VPS13C-207ENST00000558919 SH3RF3Q8TEJ3 882 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-207ENST00000558919 ORAI2Q96SN7 254 aa5.13□□□□□ -1.59
VPS13C-207ENST00000558919 FAM126AQ9BYI3 521 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-207ENST00000558919 PRDM12Q9H4Q4 367 aa5.13□□□□□ -1.59
VPS13C-207ENST00000558919 TLR9Q9NR96 1032 aa5.13□□□□□ -1.59
VPS13C-207ENST00000558919 ING3Q9NXR8 418 aa5.13□□□□□ -1.59
VPS13C-207ENST00000558919 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.13□□□□□ -1.59
VPS13C-207ENST00000558919 SH3BP1Q9Y3L3 701 aa5.13□□□□□ -1.59
VPS13C-207ENST00000558919 PHLDB1Q86UU1 1377 aa5.13□□□□□ -1.59
VPS13C-207ENST00000558919 K7ESF4 209 aa5.12□□□□□ -1.59
VPS13C-207ENST00000558919 PRKD3O94806 890 aa5.12□□□□□ -1.59
VPS13C-207ENST00000558919 LTA4HP09960 611 aaKnown RBP5.12□□□□□ -1.59
VPS13C-207ENST00000558919 HIBADHP31937 336 aaKnown RBP5.12□□□□□ -1.59
VPS13C-207ENST00000558919 NPEPPSP55786 919 aa5.12□□□□□ -1.59
VPS13C-207ENST00000558919 PUM1Q14671 1186 aaKnown RBP eCLIP5.12□□□□□ -1.59
VPS13C-207ENST00000558919 C19orf54Q5BKX5 351 aa5.12□□□□□ -1.59
VPS13C-207ENST00000558919 SPDYAQ5MJ70 313 aa5.12□□□□□ -1.59
VPS13C-207ENST00000558919 MFSD5Q6N075 450 aa5.12□□□□□ -1.59
VPS13C-207ENST00000558919 THEMISQ8N1K5 641 aaPredicted RBP5.12□□□□□ -1.59
VPS13C-207ENST00000558919 ARL8AQ96BM9 186 aa5.12□□□□□ -1.59
VPS13C-207ENST00000558919 MIEF2Q96C03 454 aa5.12□□□□□ -1.59
VPS13C-207ENST00000558919 AHCYL2Q96HN2 611 aaKnown RBP5.12□□□□□ -1.59
VPS13C-207ENST00000558919 ENKD1Q9H0I2 346 aa5.12□□□□□ -1.59
VPS13C-207ENST00000558919 VTA1Q9NP79 307 aa5.12□□□□□ -1.59
VPS13C-207ENST00000558919 AURKAIP1Q9NWT8 199 aaPredicted RBP5.12□□□□□ -1.59
VPS13C-207ENST00000558919 NCDNQ9UBB6 729 aa5.12□□□□□ -1.59
VPS13C-207ENST00000558919 CAPN14A8MX76 684 aa5.11□□□□□ -1.59
VPS13C-207ENST00000558919 MATN3O15232 486 aa5.11□□□□□ -1.59
VPS13C-207ENST00000558919 MTHFD2P13995 350 aa5.11□□□□□ -1.59
VPS13C-207ENST00000558919 ACRV1P26436 265 aa5.11□□□□□ -1.59
VPS13C-207ENST00000558919 UBE3CQ15386 1083 aa5.11□□□□□ -1.59
VPS13C-207ENST00000558919 FKBP15Q5T1M5 1219 aa5.11□□□□□ -1.59
VPS13C-207ENST00000558919 SPTY2D1Q68D10 685 aaPredicted RBP5.11□□□□□ -1.59
VPS13C-207ENST00000558919 SPRED1Q7Z699 444 aa5.11□□□□□ -1.59
VPS13C-207ENST00000558919 DDX42Q86XP3 938 aaKnown RBP eCLIP5.11□□□□□ -1.59
VPS13C-207ENST00000558919 CMIPQ8IY22 773 aa5.11□□□□□ -1.59
VPS13C-207ENST00000558919 MSL3Q8N5Y2 521 aaKnown RBP5.11□□□□□ -1.59
VPS13C-207ENST00000558919 C14orf119Q9NWQ9 140 aa5.11□□□□□ -1.59
VPS13C-207ENST00000558919 HECAQ9UBI9 543 aaPredicted RBP5.11□□□□□ -1.59
VPS13C-207ENST00000558919 GIT1Q9Y2X7 761 aa5.11□□□□□ -1.59
VPS13C-207ENST00000558919 KRTAP23-1A1A580 65 aa5.1□□□□□ -1.59
VPS13C-207ENST00000558919 MFAP3LO75121 409 aa5.1□□□□□ -1.59
VPS13C-207ENST00000558919 TMEM127O75204 238 aa5.1□□□□□ -1.59
VPS13C-207ENST00000558919 TNFRSF1AP19438 455 aa5.1□□□□□ -1.59
VPS13C-207ENST00000558919 SCAND1P57086 179 aa5.1□□□□□ -1.59
VPS13C-207ENST00000558919 ERVK-21P61565 698 aa5.1□□□□□ -1.59
VPS13C-207ENST00000558919 DUSP2Q05923 314 aa5.1□□□□□ -1.59
VPS13C-207ENST00000558919 ELAVL1Q15717 326 aaKnown RBP5.1□□□□□ -1.59
VPS13C-207ENST00000558919 USP39Q53GS9 565 aaKnown RBP5.1□□□□□ -1.59
VPS13C-207ENST00000558919 KCNK18Q7Z418 384 aa5.1□□□□□ -1.59
VPS13C-207ENST00000558919 NECAB2Q7Z6G3 386 aa5.1□□□□□ -1.59
VPS13C-207ENST00000558919 SNX33Q8WV41 574 aa5.1□□□□□ -1.59
VPS13C-207ENST00000558919 AUTS2Q8WXX7 1259 aa5.1□□□□□ -1.59
VPS13C-207ENST00000558919 ZNF512Q96ME7 567 aaPredicted RBP5.1□□□□□ -1.59
VPS13C-207ENST00000558919 DPP7Q9UHL4 492 aa5.1□□□□□ -1.59
VPS13C-207ENST00000558919 EDARQ9UNE0 448 aa5.1□□□□□ -1.59
VPS13C-207ENST00000558919 ATP8A1Q9Y2Q0 1164 aa5.1□□□□□ -1.59
VPS13C-207ENST00000558919 IPO13O94829 963 aaKnown RBP5.09□□□□□ -1.59
VPS13C-207ENST00000558919 GYPEP15421 78 aa5.09□□□□□ -1.59
VPS13C-207ENST00000558919 CTSSP25774 331 aa5.09□□□□□ -1.59
VPS13C-207ENST00000558919 GPR3P46089 330 aa5.09□□□□□ -1.59
VPS13C-207ENST00000558919 ANO4Q32M45 955 aa5.09□□□□□ -1.59
VPS13C-207ENST00000558919 GJC2Q5T442 439 aaPredicted RBP5.09□□□□□ -1.59
VPS13C-207ENST00000558919 RNF207Q6ZRF8 634 aa5.09□□□□□ -1.59
VPS13C-207ENST00000558919 ZNF662Q6ZS27 426 aa5.09□□□□□ -1.59
VPS13C-207ENST00000558919 APBB1IPQ7Z5R6 666 aaPredicted RBP5.09□□□□□ -1.59
VPS13C-207ENST00000558919 GSPT2Q8IYD1 628 aaKnown RBP5.09□□□□□ -1.59
VPS13C-207ENST00000558919 OR5M3Q8NGP4 307 aa5.09□□□□□ -1.59
VPS13C-207ENST00000558919 TGFBRAP1Q8WUH2 860 aa5.09□□□□□ -1.59
VPS13C-207ENST00000558919 MENTQ9BUN1 341 aa5.09□□□□□ -1.59
VPS13C-207ENST00000558919 PUS7LQ9H0K6 701 aaKnown RBP5.09□□□□□ -1.59
VPS13C-207ENST00000558919 SLC5A4Q9NY91 659 aa5.09□□□□□ -1.59
VPS13C-207ENST00000558919 WASHC2AQ641Q2 1341 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 RPTORQ8N122 1335 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 PLSCR1O15162 318 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 HOXA3O43365 443 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-207ENST00000558919 PRAMEF4O60810 478 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 PHF2O75151 1096 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 GASTP01350 101 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 CASRP41180 1078 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 CDK17Q00537 523 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 MRPL49Q13405 166 aaKnown RBP5.08□□□□□ -1.6
VPS13C-207ENST00000558919 MUM1Q2TAK8 710 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 NRN1LQ496H8 165 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 BTNL9Q6UXG8 535 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 ABHD15Q6UXT9 468 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 C1orf210Q8IVY1 113 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 MDGA1Q8NFP4 955 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 COG1Q8WTW3 980 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 TSPEARQ8WU66 669 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 EXTL1Q92935 676 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 FATE1Q969F0 183 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 IL17RAQ96F46 866 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 PDCD2LQ9BRP1 358 aa5.08□□□□□ -1.6
VPS13C-207ENST00000558919 QRSL1Q9H0R6 528 aaKnown RBP5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms