RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 PRKCBP05771 671 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 IQCF3P0C7M6 154 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 DARSP14868 501 aaKnown RBP10.56□□□□□ -0.72
CUX1-216ENST00000558469 SELPP16109 830 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 SCP2P22307 547 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 FGFR4P22455 802 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 EIF4BP23588 611 aaKnown RBP10.56□□□□□ -0.72
CUX1-216ENST00000558469 ABCD1P33897 745 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 HOXD13P35453 343 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 MBTD1Q05BQ5 628 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 STIM1Q13586 685 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 MAPK6Q16659 721 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 COBLL1Q53SF7 1204 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 FAM26DQ5JW98 314 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 KLHL10Q6JEL2 608 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 SRGAP1Q7Z6B7 1085 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 SYCP3Q8IZU3 236 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 ADSSL1Q8N142 457 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 GUF1Q8N442 669 aaKnown RBP10.56□□□□□ -0.72
CUX1-216ENST00000558469 MLKLQ8NB16 471 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 TET1Q8NFU7 2136 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 SCFD1Q8WVM8 642 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 TMEM40Q8WWA1 233 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 HVCN1Q96D96 273 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 BICD1Q96G01 975 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 ACCSQ96QU6 501 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 FUCA2Q9BTY2 467 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 NOC4LQ9BVI4 516 aaKnown RBP10.56□□□□□ -0.72
CUX1-216ENST00000558469 PPP1R12CQ9BZL4 782 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 CCDC113Q9H0I3 377 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 HIPK3Q9H422 1215 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 PRDM5Q9NQX1 630 aaPredicted RBP10.56□□□□□ -0.72
CUX1-216ENST00000558469 ANO10Q9NW15 660 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 USP20Q9Y2K6 914 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 UBE4BO95155 1302 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 UMODL1Q5DID0 1318 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 TRIP11Q15643 1979 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 ERLIN2O94905 339 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 CYP2C18P33260 490 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 CCL23P55773 120 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 RBL2Q08999 1139 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 PRPF4BQ13523 1007 aaKnown RBP10.55□□□□□ -0.72
CUX1-216ENST00000558469 KNOP1Q1ED39 458 aaKnown RBP10.55□□□□□ -0.72
CUX1-216ENST00000558469 TMEM132AQ24JP5 1023 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 ANO6Q4KMQ2 910 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 TRAF7Q6Q0C0 670 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 LRSAM1Q6UWE0 723 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 C11orf57Q6ZUT1 292 aaPredicted RBP10.55□□□□□ -0.72
CUX1-216ENST00000558469 LRRC8DQ7L1W4 858 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 CATSPER4Q7RTX7 472 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 DHTKD1Q96HY7 919 aaPredicted RBP10.55□□□□□ -0.72
CUX1-216ENST00000558469 ANP32EQ9BTT0 268 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 OSBPL7Q9BZF2 842 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 DNAJC25Q9H1X3 360 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 IKZF4Q9H2S9 585 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 FZD8Q9H461 694 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 TMEM206Q9H813 350 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 PRMT7Q9NVM4 692 aaPredicted RBP10.55□□□□□ -0.72
CUX1-216ENST00000558469 DACH1Q9UI36 760 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 TBX21Q9UL17 535 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 EXOC7Q9UPT5 735 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 CTNND2Q9UQB3 1225 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 NOC2LQ9Y3T9 749 aaKnown RBP10.55□□□□□ -0.72
CUX1-216ENST00000558469 CITO14578 2027 aa10.55□□□□□ -0.72
CUX1-216ENST00000558469 ZMYM2Q9UBW7 1377 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 LTBP2Q14767 1821 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 TRIM43BA6NCK2 446 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 ACKR2O00590 384 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 PSMA7O14818 248 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 HNRNPDLO14979 420 aaKnown RBP10.54□□□□□ -0.72
CUX1-216ENST00000558469 B4GALT5O43286 388 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 RPS6KA5O75582 802 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 EDN1P05305 212 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 GHRP10912 638 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 ANK1P16157 1881 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 SFPQP23246 707 aaKnown RBP eCLIP10.54□□□□□ -0.722e-6■■■□□ 16.1
CUX1-216ENST00000558469 PPP1R2P41236 205 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 LIG4P49917 911 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 ZNF445P59923 1031 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 LPIN1Q14693 890 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 MBTPS1Q14703 1052 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 FAM187BQ17R55 369 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 BMT2Q1RMZ1 405 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 FBXO47Q5MNV8 452 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 FAM228AQ86W67 206 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 MAP4K3Q8IVH8 894 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 NELFBQ8WX92 580 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 KCNN1Q92952 543 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 TRIM43Q96BQ3 446 aaPredicted RBP10.54□□□□□ -0.72
CUX1-216ENST00000558469 SCLYQ96I15 445 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 CPB2Q96IY4 423 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 PRIMPOLQ96LW4 560 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 HTATIP2Q9BUP3 242 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 TARS2Q9BW92 718 aaKnown RBP10.54□□□□□ -0.72
CUX1-216ENST00000558469 WNT8AQ9H1J5 351 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 KCTD10Q9H3F6 313 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 SEMA6BQ9H3T3 888 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 TSPY26PQ9H489 355 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 ST3GAL5Q9UNP4 418 aa10.54□□□□□ -0.72
CUX1-216ENST00000558469 MICAL3Q7RTP6 2002 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms