RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 RSAD1Q9HA92 442 aa20.47■□□□□ 0.87
VIPAS39-209ENST00000556909 BMP2KQ9NSY1 1161 aaPredicted RBP20.47■□□□□ 0.87
VIPAS39-209ENST00000556909 USTQ9Y2C2 406 aa20.47■□□□□ 0.87
VIPAS39-209ENST00000556909 PPME1Q9Y570 386 aa20.47■□□□□ 0.87
VIPAS39-209ENST00000556909 ZFHX2Q9C0A1 2572 aaPredicted RBP20.47■□□□□ 0.87
VIPAS39-209ENST00000556909 DDHD2O94830 711 aa20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 P4HBP07237 508 aaKnown RBP20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 GCFC2P16383 781 aaKnown RBP20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 RFC5P40937 340 aa20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 UBXN11Q5T124 520 aa20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 PPP4R3AQ6IN85 833 aa20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 TMC5Q6UXY8 1006 aa20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 SRGAP1Q7Z6B7 1085 aa20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 MRPL10Q7Z7H8 261 aaKnown RBP20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 NEK8Q86SG6 692 aa20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 CABP7Q86V35 215 aa20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 PPFIBP1Q86W92 1011 aa20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 PRPF31Q8WWY3 499 aaKnown RBP20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 LXNQ9BS40 222 aa20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 IRF2BPLQ9H1B7 796 aa20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 SLKQ9H2G2 1235 aaPredicted RBP20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 SFXN1Q9H9B4 322 aa20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 DMDP11532 3685 aa20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 CNTNAP2Q9UHC6 1331 aa20.46■□□□□ 0.87
VIPAS39-209ENST00000556909 SRGAP2CP0DJJ0 459 aa20.45■□□□□ 0.86
VIPAS39-209ENST00000556909 HOXA11P31270 313 aaPredicted RBP20.45■□□□□ 0.86
VIPAS39-209ENST00000556909 NUBP1P53384 320 aa20.45■□□□□ 0.86
VIPAS39-209ENST00000556909 LAMTOR4Q0VGL1 99 aa20.45■□□□□ 0.86
VIPAS39-209ENST00000556909 SCRN1Q12765 414 aa20.45■□□□□ 0.86
VIPAS39-209ENST00000556909 EXOC8Q8IYI6 725 aa20.45■□□□□ 0.86
VIPAS39-209ENST00000556909 HAS1Q92839 578 aa20.45■□□□□ 0.86
VIPAS39-209ENST00000556909 ATOH1Q92858 354 aaPredicted RBP20.45■□□□□ 0.86
VIPAS39-209ENST00000556909 TMEM175Q9BSA9 504 aa20.45■□□□□ 0.86
VIPAS39-209ENST00000556909 LIMD1Q9UGP4 676 aa20.45■□□□□ 0.86
VIPAS39-209ENST00000556909 STK36Q9NRP7 1315 aa20.45■□□□□ 0.86
VIPAS39-209ENST00000556909 GALR2O43603 387 aaPredicted RBP20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 CCNT1O60563 726 aaKnown RBP20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 CDKL5O76039 1030 aa20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 SSBP05455 408 aaKnown RBP eCLIP20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 YWHABP31946 246 aaKnown RBP20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 CLCN4P51793 760 aa20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 EMC2Q15006 297 aa20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 POTEDQ86YR6 584 aa20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 C4orf19Q8IY42 314 aa20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 PLCD3Q8N3E9 789 aa20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 TMEM105Q8N8V8 129 aa20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 KLHL5Q96PQ7 755 aa20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 EMILIN2Q9BXX0 1053 aa20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 GJB4Q9NTQ9 266 aa20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 PDRG1Q9NUG6 133 aa20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 STK39Q9UEW8 545 aa20.44■□□□□ 0.86
VIPAS39-209ENST00000556909 H0Y858 1186 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 TBX3O15119 743 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 GAS2O43903 313 aaKnown RBP20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 ST18O60284 1047 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 GFRA3O60609 400 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 LILRB3O75022 631 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 POMCP01189 267 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 CNPP09543 421 aaKnown RBP20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 EPHA7Q15375 998 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 NCAPH2Q6IBW4 605 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 PIK3AP1Q6ZUJ8 805 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 GPR149Q86SP6 731 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 FERMT3Q86UX7 667 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 RNF149Q8NC42 400 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 OXER1Q8TDS5 423 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 TCP11Q8WWU5 503 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 FAM193BQ96PV7 902 aaPredicted RBP20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 RGL1Q9NZL6 768 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 KANSL3Q9P2N6 904 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 FAN1Q9Y2M0 1017 aa20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 MTCL1Q9Y4B5 1905 aaKnown RBP20.43■□□□□ 0.86
VIPAS39-209ENST00000556909 VPS13AQ96RL7 3174 aa20.42■□□□□ 0.86
VIPAS39-209ENST00000556909 SPDYE4A6NLX3 237 aa20.42■□□□□ 0.86
VIPAS39-209ENST00000556909 NRP1O14786 923 aa20.42■□□□□ 0.86
VIPAS39-209ENST00000556909 NCLP19338 710 aaKnown RBP20.42■□□□□ 0.86
VIPAS39-209ENST00000556909 KLRC2P26717 231 aa20.42■□□□□ 0.86
VIPAS39-209ENST00000556909 CYP4A11Q02928 519 aa20.42■□□□□ 0.86
VIPAS39-209ENST00000556909 SPIRE1Q08AE8 756 aa20.42■□□□□ 0.86
VIPAS39-209ENST00000556909 CCDC149Q6ZUS6 474 aa20.42■□□□□ 0.86
VIPAS39-209ENST00000556909 SMG8Q8ND04 991 aaKnown RBP20.42■□□□□ 0.86
VIPAS39-209ENST00000556909 DYDC2Q96IM9 177 aa20.42■□□□□ 0.86
VIPAS39-209ENST00000556909 NAP1L4Q99733 375 aaKnown RBP20.42■□□□□ 0.86
VIPAS39-209ENST00000556909 MARCH5Q9NX47 278 aa20.42■□□□□ 0.86
VIPAS39-209ENST00000556909 DOCK8Q8NF50 2099 aa20.41■□□□□ 0.86
VIPAS39-209ENST00000556909 ASAP2O43150 1006 aa20.41■□□□□ 0.86
VIPAS39-209ENST00000556909 DTNBO60941 627 aa20.41■□□□□ 0.86
VIPAS39-209ENST00000556909 SOD2P04179 222 aa20.41■□□□□ 0.86
VIPAS39-209ENST00000556909 ALDH2P05091 517 aa20.41■□□□□ 0.86
VIPAS39-209ENST00000556909 XBP1P17861 261 aa20.41■□□□□ 0.86
VIPAS39-209ENST00000556909 CTTNQ14247 550 aaKnown RBP20.41■□□□□ 0.86
VIPAS39-209ENST00000556909 XKR9Q5GH70 373 aa20.41■□□□□ 0.86
VIPAS39-209ENST00000556909 EARS2Q5JPH6 523 aaKnown RBP20.41■□□□□ 0.86
VIPAS39-209ENST00000556909 OTUD6AQ7L8S5 288 aa20.41■□□□□ 0.86
VIPAS39-209ENST00000556909 ACSF2Q96CM8 615 aaPredicted RBP20.41■□□□□ 0.86
VIPAS39-209ENST00000556909 MTRQ99707 1265 aa20.41■□□□□ 0.86
VIPAS39-209ENST00000556909 HERC2P3Q9BVR0 1158 aa20.41■□□□□ 0.86
VIPAS39-209ENST00000556909 ZSWIM4Q9H7M6 989 aa20.41■□□□□ 0.86
VIPAS39-209ENST00000556909 MRPL17Q9NRX2 175 aaKnown RBP20.41■□□□□ 0.86
VIPAS39-209ENST00000556909 PRG3Q9Y2Y8 225 aaPredicted RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms