RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 PCDHGC5Q9Y5F6 944 aa11.39□□□□□ -0.59
CCDC88C-206ENST00000553437 A0A1B0GUA9 196 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 VWA3AA6NCI4 1184 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 LRRIQ4A6NIV6 560 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 FSCN2O14926 492 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 ERLIN2O94905 339 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 CSPG5O95196 566 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 EYA4O95677 639 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 NCLP19338 710 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 PDCP20941 246 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 LTBRP36941 435 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 AFF1P51825 1210 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 ERVFC1P60507 584 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 RESTQ13127 1097 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 FAM187BQ17R55 369 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 CTC1Q2NKJ3 1217 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 LEXMQ3ZCV2 418 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 NOMO2Q5JPE7 1267 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 GLB1LQ6UWU2 654 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 ADGRD2Q7Z7M1 963 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 THNSL1Q8IYQ7 743 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 SLC39A11Q8N1S5 342 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 PGBD4Q96DM1 585 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 ZNF558Q96NG5 402 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 EIF2AQ9BY44 585 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 MRPL9Q9BYD2 267 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 CSRNP2Q9H175 543 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 TBC1D13Q9NVG8 400 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 DNM3Q9UQ16 869 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 LOXHD1Q8IVV2 1947 aa11.38□□□□□ -0.59
CCDC88C-206ENST00000553437 VPS37CA5D8V6 355 aaPredicted RBP11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 TTLL13PA6NNM8 815 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 INPPL1O15357 1258 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 B4GALT3O60512 393 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 KCNA5P22460 613 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 GTF2F1P35269 517 aaKnown RBP eCLIP11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 NAMPTP43490 491 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 BCAR1P56945 870 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 MAPK7Q13164 816 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 RINT1Q6NUQ1 792 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 NOTUMQ6P988 496 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 C1orf186Q6ZWK4 172 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 DAW1Q8N136 415 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 CNNM3Q8NE01 707 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 ADAMTS19Q8TE59 1207 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 MRPS27Q92552 414 aaKnown RBP11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 KIFAP3Q92845 792 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 RUSC1Q9BVN2 902 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 CCDC113Q9H0I3 377 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 NRDE2Q9H7Z3 1164 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 RSAD1Q9HA92 442 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 TLR9Q9NR96 1032 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 FOXD4L1Q9NU39 408 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 SPG21Q9NZD8 308 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 MTMR6Q9Y217 621 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 LZTS1Q9Y250 596 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 IPPQ9Y573 584 aa11.37□□□□□ -0.59
CCDC88C-206ENST00000553437 CNTNAP2Q9UHC6 1331 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 NT5C1B-RDH14C9J2C7 533 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 NCK2O43639 380 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 BMP15O95972 392 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 EDN1P05305 212 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 GALTP07902 379 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 PPM1AP35813 382 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 GRIN1Q05586 938 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 DLX2Q07687 328 aaPredicted RBP11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 NCBP1Q09161 790 aaKnown RBP11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 ADAM15Q13444 863 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 PTPAQ15257 358 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 SF3A1Q15459 793 aaKnown RBP11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 TMEM119Q4V9L6 283 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 TMEM173Q86WV6 379 aaPredicted RBP11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 CDR2LQ86X02 465 aaPredicted RBP11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 ZNF280BQ86YH2 543 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 ZBTB8OSQ8IWT0 167 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 KCTD17Q8N5Z5 321 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 LRRC15Q8TF66 581 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 PRIMPOLQ96LW4 560 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 NECAB3Q96P71 396 aaPredicted RBP11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 PLIN2Q99541 437 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 KIFC3Q9BVG8 833 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 C2orf40Q9H1Z8 148 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 PRMT7Q9NVM4 692 aaPredicted RBP11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 CLDND1Q9NY35 253 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 INPP5FQ9Y2H2 1132 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 USP20Q9Y2K6 914 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 HES2Q9Y543 173 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 CLIC4Q9Y696 253 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 RALGAPA2Q2PPJ7 1873 aa11.36□□□□□ -0.59
CCDC88C-206ENST00000553437 H3BQ06 376 aaPredicted RBP11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 ACKR2O00590 384 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 LINC01565O15544 149 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 SLC26A4O43511 780 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 HIP1RO75146 1068 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 DDHD2O94830 711 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 PRKCBP05771 671 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 ITGA4P13612 1032 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 GUCY2CP25092 1073 aa11.35□□□□□ -0.59
CCDC88C-206ENST00000553437 SLC11A1P49279 550 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms