RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TBCKQ8TEA7 893 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 JAKMIP2Q96AA8 810 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 CCDC114Q96M63 670 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 GPR20Q99678 358 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 GDF15Q99988 308 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 C16orf70Q9BSU1 422 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 PRO3102Q9H379 93 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 TMEM39AQ9NV64 488 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 FRMD3A2A2Y4 597 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 DCDC2CA8MYV0 355 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 WNT7AO00755 349 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 CYP3A4P08684 503 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 GBP2P32456 591 aaPredicted RBP8.34□□□□□ -1.08
LIMA1-216ENST00000552909 MCM7P33993 719 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 ZNF76P36508 570 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 ATP1A2P50993 1020 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 CCNHP51946 323 aaPredicted RBP8.34□□□□□ -1.08
LIMA1-216ENST00000552909 SLC8A3P57103 927 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 HIC1Q14526 733 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 INF2Q27J81 1249 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 FAM47CQ5HY64 1035 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 TTC38Q5R3I4 469 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 AP1ARQ63HQ0 302 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 TLDC1Q6P9B6 456 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 CYB5D1Q6P9G0 228 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 KDM7AQ6ZMT4 941 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 KRI1Q8N9T8 703 aaKnown RBP8.34□□□□□ -1.08
LIMA1-216ENST00000552909 BADQ92934 168 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 GJA10Q969M2 543 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 LENG9Q96B70 501 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 ARL8AQ96BM9 186 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 SCLT1Q96NL6 688 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 EHMT1Q9H9B1 1298 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 SPATS2LQ9NUQ6 558 aaKnown RBP8.34□□□□□ -1.08
LIMA1-216ENST00000552909 TBX21Q9UL17 535 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 CEP131Q9UPN4 1083 aa8.34□□□□□ -1.08
LIMA1-216ENST00000552909 UMODL1Q5DID0 1318 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 GSTTP1A0A1W2PQM5 241 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 NOP56O00567 594 aaKnown RBP8.33□□□□□ -1.08
LIMA1-216ENST00000552909 MAFGO15525 162 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 KPNA6O60684 536 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 F2P00734 622 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 CYP2C9P11712 490 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 GCKP35557 465 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 ZNF200P98182 395 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-216ENST00000552909 IFFO1Q0D2I5 559 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 IFT88Q13099 833 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 TRIM14Q14142 442 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 KIAA0753Q2KHM9 967 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 KANK3Q6NY19 840 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 EMBQ6PCB8 327 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 CCDC121Q6ZUS5 278 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 KRT25Q7Z3Z0 450 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 RSRC1Q96IZ7 334 aaKnown RBP8.33□□□□□ -1.08
LIMA1-216ENST00000552909 CDHR1Q96JP9 859 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 SH3GL3Q99963 347 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 AGO4Q9HCK5 861 aaKnown RBP8.33□□□□□ -1.08
LIMA1-216ENST00000552909 TRIM10Q9UDY6 481 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 PRKAG2Q9UGJ0 569 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 EPN1Q9Y6I3 576 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-216ENST00000552909 CHD9Q3L8U1 2897 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 CHD7Q9P2D1 2997 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 PRUNE2Q8WUY3 3088 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 LTBP2Q14767 1821 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 MROH7Q68CQ1 1323 aa8.33□□□□□ -1.08
LIMA1-216ENST00000552909 H3BRB1 525 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 DDX39AO00148 427 aaKnown RBP8.32□□□□□ -1.08
LIMA1-216ENST00000552909 HAS3O00219 553 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 KIAA0355O15063 1070 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 DHX15O43143 795 aaKnown RBP8.32□□□□□ -1.08
LIMA1-216ENST00000552909 PPP1R37O75864 691 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 NDUFA10O95299 355 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 LGALS2P05162 132 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 SSR1P43307 286 aaKnown RBP8.32□□□□□ -1.08
LIMA1-216ENST00000552909 TRAPPC10P48553 1259 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 PSEN2P49810 448 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 EPHB4P54760 987 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 C2orf54Q08AI8 447 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 PTGDRQ13258 359 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 NNTQ13423 1086 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 NONOQ15233 471 aaKnown RBP eCLIP8.32□□□□□ -1.08
LIMA1-216ENST00000552909 PTGISQ16647 500 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 PRR16Q569H4 304 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 CCDC122Q5T0U0 273 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 CDKAL1Q5VV42 579 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 GDF6Q6KF10 455 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-216ENST00000552909 NLRP14Q86W24 1093 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 FUKQ8N0W3 1084 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 ZNF483Q8TF39 744 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-216ENST00000552909 CCT8L2Q96SF2 557 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 PPP1R12CQ9BZL4 782 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 TUT1Q9H6E5 874 aaKnown RBP8.32□□□□□ -1.08
LIMA1-216ENST00000552909 SERTAD1Q9UHV2 236 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 SRRM3A6NNA2 597 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-216ENST00000552909 IPO5O00410 1097 aaKnown RBP8.32□□□□□ -1.08
LIMA1-216ENST00000552909 POLR2DO15514 142 aaKnown RBP8.32□□□□□ -1.08
LIMA1-216ENST00000552909 TDP2O95551 362 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 CCNE2O96020 404 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 RAG1P15918 1043 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 CIITAP33076 1130 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms