RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ELF1P32519 619 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 FOXK1P85037 733 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 NFIAQ12857 509 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 MAPK7Q13164 816 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 CTTNQ14247 550 aaKnown RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 NEDD9Q14511 834 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 ARHGAP44Q17R89 818 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 CCDC38Q502W7 563 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 GPATCH4Q5T3I0 446 aaKnown RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 PRR5LQ6MZQ0 368 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 PHLDB3Q6NSJ2 640 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 RINT1Q6NUQ1 792 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 HIBCHQ6NVY1 386 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 TLDC1Q6P9B6 456 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 BARGINQ6ZT62 677 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 SIAH1Q8IUQ4 282 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 FAM186BQ8IYM0 893 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 SLFN12Q8IYM2 578 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 KIRREL3Q8IZU9 778 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 CCDC197Q8NCU1 140 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 TBC1D16Q8TBP0 767 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 NEK9Q8TD19 979 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 MAGEC3Q8TD91 643 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 PGM2Q96G03 612 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 PRMT1Q99873 361 aaKnown RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 ELAC2Q9BQ52 826 aaKnown RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 STK33Q9BYT3 514 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 METTL14Q9HCE5 456 aaKnown RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 ABCF3Q9NUQ8 709 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 GGT7Q9UJ14 662 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 GGA1Q9UJY5 639 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 ODF2LQ9ULJ1 636 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 SLC12A4Q9UP95 1085 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 ALG6Q9Y672 507 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 MYH11P35749 1972 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 EP400Q96L91 3159 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 FOXN3O00409 490 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 TP73O15350 636 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 SCP2P22307 547 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 HOXA13P31271 388 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 IFNAR2P48551 515 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 SCNN1DP51172 638 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 LLGL1Q15334 1064 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 PPP2R5EQ16537 467 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 TNFAIP8L3Q5GJ75 292 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 CNBD1Q8NA66 436 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 BANK1Q8NDB2 785 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 CTNNBL1Q8WYA6 563 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 N4BP2L2Q92802 583 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 POP1Q99575 1024 aaKnown RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 EIF2AK1Q9BQI3 630 aaKnown RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 RAB17Q9H0T7 212 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 NOD2Q9HC29 1040 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 SEPT11Q9NVA2 429 aaKnown RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 USP40Q9NVE5 1235 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 DBR1Q9UK59 544 aaKnown RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 DIS3Q9Y2L1 958 aaKnown RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 PCDHAC2Q9Y5I4 1007 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 SIPA1L1O43166 1804 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 TMEM110-MUSTN1A8MSY1 372 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 ATP6V1G2O95670 118 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 EEF2P13639 858 aaKnown RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 KRT13P13646 458 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 LMNB1P20700 586 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 ATP2B4P23634 1241 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 RPL13P26373 211 aaKnown RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 KCNJ1P48048 391 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 CYP2J2P51589 502 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 DLG4P78352 724 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 DSG2Q14126 1118 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 PPP1R7Q15435 360 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 USH1GQ495M9 461 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 Q4G0T1 1027 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 FAM133BQ5BKY9 247 aaKnown RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 DENND2CQ68D51 928 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 ZNF746Q6NUN9 644 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 HOOK3Q86VS8 718 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 SLF2Q8IX21 1173 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 ZNF454Q8N9F8 522 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 RDH13Q8NBN7 331 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 LMO3Q8TAP4 145 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 TBC1D31Q96DN5 1066 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 CRAMP1Q96RY5 1269 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 INTS2Q9H0H0 1204 aaKnown RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 GLT8D2Q9H1C3 349 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 ACP6Q9NPH0 428 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 OLFML3Q9NRN5 406 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 WRAP73Q9P2S5 460 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 SUFUQ9UMX1 484 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 BTAF1O14981 1849 aa5.85□□□□□ -1.47
LIMA1-212ENST00000552491 AHDC1Q5TGY3 1603 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-212ENST00000552491 FAM187AA6NFU0 413 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 TISP43B9A030 160 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 RGS16O15492 202 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 ASAP2O43150 1006 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 PPP1R12BO60237 982 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 PHF2O75151 1096 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 TBCAO75347 108 aaKnown RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 EYA4O95677 639 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 PYGMP11217 842 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms