RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 ACSF2Q96CM8 615 aaPredicted RBP11.89□□□□□ -0.51
VPS29-208ENST00000550267 RTP3Q9BQQ7 232 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 ADAMTS10Q9H324 1103 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 RIC8AQ9NPQ8 531 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 FBXL21Q9UKT6 434 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 DUSP12Q9UNI6 340 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 AKT3Q9Y243 479 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 WASF2Q9Y6W5 498 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 A0A0U1RQF3 1178 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 FAM86B1E9PN63 330 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 CAPN5O15484 640 aaPredicted RBP11.88□□□□□ -0.51
VPS29-208ENST00000550267 FOSP01100 380 aaPredicted RBP11.88□□□□□ -0.51
VPS29-208ENST00000550267 FAM86B2P0C5J1 330 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 CTSAP10619 480 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 EIF4BP23588 611 aaKnown RBP11.88□□□□□ -0.51
VPS29-208ENST00000550267 SREBF1P36956 1147 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 ADCY7P51828 1080 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 NAPAP54920 295 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 TTC22Q5TAA0 569 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 EFCAB12Q6NXP0 572 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 CCDC149Q6ZUS6 474 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 NIPA1Q7RTP0 329 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 DGLUCYQ7Z3D6 616 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 GPR149Q86SP6 731 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 CABP7Q86V35 215 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 PLA2G4DQ86XP0 818 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 TMTC2Q8N394 836 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 LINC01465Q8N7H1 131 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 BCL7CQ8WUZ0 217 aaPredicted RBP11.88□□□□□ -0.51
VPS29-208ENST00000550267 MAP4K1Q92918 833 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 TMEM87BQ96K49 555 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 MAP7D2Q96T17 732 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 MTA3Q9BTC8 594 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 MRPL9Q9BYD2 267 aaKnown RBP11.88□□□□□ -0.51
VPS29-208ENST00000550267 KCNK12Q9HB15 430 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 NXF1Q9UBU9 619 aaKnown RBP11.88□□□□□ -0.51
VPS29-208ENST00000550267 MAFBQ9Y5Q3 323 aaPredicted RBP11.88□□□□□ -0.51
VPS29-208ENST00000550267 RBM8AQ9Y5S9 174 aaKnown RBP11.88□□□□□ -0.51
VPS29-208ENST00000550267 R4GN57 208 aa11.88□□□□□ -0.51
VPS29-208ENST00000550267 CNTNAP5Q8WYK1 1306 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 DENND4AQ7Z401 1863 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 SGSM2O43147 1006 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 NARSO43776 548 aaKnown RBP11.87□□□□□ -0.51
VPS29-208ENST00000550267 ZC3H11AO75152 810 aaKnown RBP eCLIP11.87□□□□□ -0.51
VPS29-208ENST00000550267 LMNAP02545 664 aaKnown RBP11.87□□□□□ -0.51
VPS29-208ENST00000550267 MCM5P33992 734 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 GPC3P51654 580 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 OTOP3Q7RTS5 596 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 TRIM46Q7Z4K8 759 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 MICU3Q86XE3 530 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 NPAS3Q8IXF0 933 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 KIAA2013Q8IYS2 634 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 FANCBQ8NB91 859 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 LRRC2Q9BYS8 371 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 SFXN1Q9H9B4 322 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 GABBR1Q9UBS5 961 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 CEP131Q9UPN4 1083 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 IRAK3Q9Y616 596 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 SLC12A7Q9Y666 1083 aa11.87□□□□□ -0.51
VPS29-208ENST00000550267 IGLV3-22A0A075B6J6 115 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 SMCO2A6NFE2 343 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 IPO5O00410 1097 aaKnown RBP11.86□□□□□ -0.51
VPS29-208ENST00000550267 MAGEB2O15479 319 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 CSDE1O75534 798 aaKnown RBP11.86□□□□□ -0.51
VPS29-208ENST00000550267 DARSP14868 501 aaKnown RBP11.86□□□□□ -0.51
VPS29-208ENST00000550267 LIFRP42702 1097 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 CLK2P49760 499 aaKnown RBP11.86□□□□□ -0.51
VPS29-208ENST00000550267 POLGP54098 1239 aaPredicted RBP11.86□□□□□ -0.51
VPS29-208ENST00000550267 AP3B2Q13367 1082 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 AAMPQ13685 434 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 GIT2Q14161 759 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 PTPRNQ16849 979 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 LONRF3Q496Y0 759 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 DDX53Q86TM3 631 aaKnown RBP11.86□□□□□ -0.51
VPS29-208ENST00000550267 RSAD2Q8WXG1 361 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 RIN2Q8WYP3 895 aaPredicted RBP11.86□□□□□ -0.51
VPS29-208ENST00000550267 LPPQ93052 612 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 IGSF21Q96ID5 467 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 SCLT1Q96NL6 688 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 ZNF577Q9BSK1 485 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 VN1R3Q9BXE9 311 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 NRDE2Q9H7Z3 1164 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 EVA1BQ9NVM1 165 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 SPTBN4Q9H254 2564 aa11.86□□□□□ -0.51
VPS29-208ENST00000550267 KRBA1A5PL33 1030 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 PSAPP07602 524 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 GALTP07902 379 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 TMOD1P28289 359 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 PTPN14Q15678 1187 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 JAKMIP3Q5VZ66 844 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 ZNF746Q6NUN9 644 aaPredicted RBP11.85□□□□□ -0.51
VPS29-208ENST00000550267 PPFIBP1Q86W92 1011 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 SPIRE2Q8WWL2 714 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 KLHL5Q96PQ7 755 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 GBP3Q9H0R5 595 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 SEMA4AQ9H3S1 761 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 DACT1Q9NYF0 836 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 IGSF9Q9P2J2 1179 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 DNAJB4Q9UDY4 337 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 CA14Q9ULX7 337 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms