RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 CEP170P1Q96L14 293 aa14.38□□□□□ -0.11
PTCH1-218ENST00000548945 PHOX2BQ99453 314 aa14.38□□□□□ -0.11
PTCH1-218ENST00000548945 TMEM175Q9BSA9 504 aa14.38□□□□□ -0.11
PTCH1-218ENST00000548945 CDH22Q9UJ99 828 aa14.38□□□□□ -0.11
PTCH1-218ENST00000548945 INPP5FQ9Y2H2 1132 aa14.38□□□□□ -0.11
PTCH1-218ENST00000548945 TDRD15B5MCY1 1934 aaKnown RBP14.38□□□□□ -0.11
PTCH1-218ENST00000548945 STK36Q9NRP7 1315 aa14.38□□□□□ -0.11
PTCH1-218ENST00000548945 MTCL1Q9Y4B5 1905 aaKnown RBP14.37□□□□□ -0.11
PTCH1-218ENST00000548945 BRD1O95696 1058 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 EPCAMP16422 314 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 SLC11A1P49279 550 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 NPEPPSP55786 919 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 LAMTOR4Q0VGL1 99 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 EPHA7Q15375 998 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 PTPN14Q15678 1187 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 AGMOQ6ZNB7 445 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 OTUD6AQ7L8S5 288 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 CABP7Q86V35 215 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 CNNM3Q8NE01 707 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 TCP11Q8WWU5 503 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 PRPF31Q8WWY3 499 aaKnown RBP14.37□□□□□ -0.11
PTCH1-218ENST00000548945 AUTS2Q8WXX7 1259 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 AIFM3Q96NN9 605 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 EMILIN2Q9BXX0 1053 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 SFXN1Q9H9B4 322 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 RSAD1Q9HA92 442 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 UBN1Q9NPG3 1134 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 DNAJB4Q9UDY4 337 aa14.37□□□□□ -0.11
PTCH1-218ENST00000548945 DBR1Q9UK59 544 aaKnown RBP14.37□□□□□ -0.11
PTCH1-218ENST00000548945 ST18O60284 1047 aa14.36□□□□□ -0.11
PTCH1-218ENST00000548945 CCNT1O60563 726 aaKnown RBP14.36□□□□□ -0.11
PTCH1-218ENST00000548945 ALDH2P05091 517 aa14.36□□□□□ -0.11
PTCH1-218ENST00000548945 HOXA11P31270 313 aaPredicted RBP14.36□□□□□ -0.11
PTCH1-218ENST00000548945 STK3Q13188 491 aa14.36□□□□□ -0.11
PTCH1-218ENST00000548945 LONRF3Q496Y0 759 aa14.36□□□□□ -0.11
PTCH1-218ENST00000548945 ZNF280BQ86YH2 543 aa14.36□□□□□ -0.11
PTCH1-218ENST00000548945 C12orf76Q8N812 135 aaPredicted RBP14.36□□□□□ -0.11
PTCH1-218ENST00000548945 HAS1Q92839 578 aa14.36□□□□□ -0.11
PTCH1-218ENST00000548945 CCDC51Q96ER9 411 aa14.36□□□□□ -0.11
PTCH1-218ENST00000548945 LXNQ9BS40 222 aa14.36□□□□□ -0.11
PTCH1-218ENST00000548945 VN1R3Q9BXE9 311 aa14.36□□□□□ -0.11
PTCH1-218ENST00000548945 GBP3Q9H0R5 595 aa14.36□□□□□ -0.11
PTCH1-218ENST00000548945 SLKQ9H2G2 1235 aaPredicted RBP14.36□□□□□ -0.11
PTCH1-218ENST00000548945 MINDY3Q9H8M7 445 aa14.36□□□□□ -0.11
PTCH1-218ENST00000548945 PDRG1Q9NUG6 133 aa14.36□□□□□ -0.11
PTCH1-218ENST00000548945 WRAP73Q9P2S5 460 aaPredicted RBP14.36□□□□□ -0.11
PTCH1-218ENST00000548945 KCNJ14Q9UNX9 436 aa14.36□□□□□ -0.11
PTCH1-218ENST00000548945 ZNF292O60281 2723 aa14.36□□□□□ -0.11
PTCH1-218ENST00000548945 PLXNA3P51805 1871 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 INPPL1O15357 1258 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 GALR2O43603 387 aaPredicted RBP14.35□□□□□ -0.11
PTCH1-218ENST00000548945 B4GALT3O60512 393 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 LILRB3O75022 631 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 DDHD2O94830 711 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 PDGFBP01127 241 aaPredicted RBP14.35□□□□□ -0.11
PTCH1-218ENST00000548945 SRGAP2CP0DJJ0 459 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 NCLP19338 710 aaKnown RBP14.35□□□□□ -0.11
PTCH1-218ENST00000548945 AXLP30530 894 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 YWHABP31946 246 aaKnown RBP14.35□□□□□ -0.11
PTCH1-218ENST00000548945 CLCN4P51793 760 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 POU5F1BQ06416 359 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 MXD4Q14582 209 aaPredicted RBP14.35□□□□□ -0.11
PTCH1-218ENST00000548945 UBXN11Q5T124 520 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 C15orf39Q6ZRI6 1047 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 GPR149Q86SP6 731 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 FERMT3Q86UX7 667 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 SLFN12Q8IYM2 578 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 ZNF579Q8NAF0 562 aaKnown RBP14.35□□□□□ -0.11
PTCH1-218ENST00000548945 TMEM143Q96AN5 459 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 ACSF2Q96CM8 615 aaPredicted RBP14.35□□□□□ -0.11
PTCH1-218ENST00000548945 FAM193BQ96PV7 902 aaPredicted RBP14.35□□□□□ -0.11
PTCH1-218ENST00000548945 ZSWIM4Q9H7M6 989 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 PPP4R2Q9NY27 417 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 SSX2IPQ9Y2D8 614 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 FAN1Q9Y2M0 1017 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 GVINP1Q7Z2Y8 2422 aa14.35□□□□□ -0.11
PTCH1-218ENST00000548945 DOCK8Q8NF50 2099 aa14.34□□□□□ -0.11
PTCH1-218ENST00000548945 BAG4O95429 457 aaKnown RBP14.34□□□□□ -0.11
PTCH1-218ENST00000548945 WEE2P0C1S8 567 aa14.34□□□□□ -0.11
PTCH1-218ENST00000548945 KLRC2P26717 231 aa14.34□□□□□ -0.11
PTCH1-218ENST00000548945 SPIRE1Q08AE8 756 aa14.34□□□□□ -0.11
PTCH1-218ENST00000548945 SCRN1Q12765 414 aa14.34□□□□□ -0.11
PTCH1-218ENST00000548945 EMC2Q15006 297 aa14.34□□□□□ -0.11
PTCH1-218ENST00000548945 TMC5Q6UXY8 1006 aa14.34□□□□□ -0.11
PTCH1-218ENST00000548945 CYP26C1Q6V0L0 522 aa14.34□□□□□ -0.11
PTCH1-218ENST00000548945 OTOP3Q7RTS5 596 aa14.34□□□□□ -0.11
PTCH1-218ENST00000548945 IFNLR1Q8IU57 520 aaPredicted RBP14.34□□□□□ -0.11
PTCH1-218ENST00000548945 RNF149Q8NC42 400 aa14.34□□□□□ -0.11
PTCH1-218ENST00000548945 CMASQ8NFW8 434 aaPredicted RBP14.34□□□□□ -0.11
PTCH1-218ENST00000548945 WASF1Q92558 559 aa14.34□□□□□ -0.11
PTCH1-218ENST00000548945 KLHL5Q96PQ7 755 aa14.34□□□□□ -0.11
PTCH1-218ENST00000548945 LARP6Q9BRS8 491 aaKnown RBP14.34□□□□□ -0.11
PTCH1-218ENST00000548945 RHOBTB2Q9BYZ6 727 aa14.34□□□□□ -0.11
PTCH1-218ENST00000548945 MRPL17Q9NRX2 175 aaKnown RBP14.34□□□□□ -0.11
PTCH1-218ENST00000548945 LIMD1Q9UGP4 676 aa14.34□□□□□ -0.11
PTCH1-218ENST00000548945 DPP7Q9UHL4 492 aa14.34□□□□□ -0.11
PTCH1-218ENST00000548945 PROB1E7EW31 1015 aa14.33□□□□□ -0.12
PTCH1-218ENST00000548945 NRP1O14786 923 aa14.33□□□□□ -0.12
PTCH1-218ENST00000548945 MARCH6O60337 910 aa14.33□□□□□ -0.12
PTCH1-218ENST00000548945 PFKFB2O60825 505 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms